Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.08■■■□□ 2.57
RPAP1Q9BWH6 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.57
RPAP1Q9BWH6 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RPAP1Q9BWH6 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
RPAP1Q9BWH6 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.06■■■□□ 2.56
RPAP1Q9BWH6 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RPAP1Q9BWH6 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC31.05■■■□□ 2.56
RPAP1Q9BWH6 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RPAP1Q9BWH6 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RPAP1Q9BWH6 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
RPAP1Q9BWH6 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31.02■■■□□ 2.56
RPAP1Q9BWH6 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC31.02■■■□□ 2.56
RPAP1Q9BWH6 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC31.01■■■□□ 2.55
RPAP1Q9BWH6 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
RPAP1Q9BWH6 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
RPAP1Q9BWH6 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
RPAP1Q9BWH6 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
RPAP1Q9BWH6 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
RPAP1Q9BWH6 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
RPAP1Q9BWH6 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.97■■■□□ 2.55
RPAP1Q9BWH6 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
RPAP1Q9BWH6 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
RPAP1Q9BWH6 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.96■■■□□ 2.55
RPAP1Q9BWH6 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
RPAP1Q9BWH6 RARRES2P2-201ENST00000394842 485 ntBASIC30.95■■■□□ 2.55
RPAP1Q9BWH6 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
RPAP1Q9BWH6 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.54
RPAP1Q9BWH6 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
RPAP1Q9BWH6 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
RPAP1Q9BWH6 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.94■■■□□ 2.54
RPAP1Q9BWH6 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
RPAP1Q9BWH6 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
RPAP1Q9BWH6 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
RPAP1Q9BWH6 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.93■■■□□ 2.54
RPAP1Q9BWH6 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
RPAP1Q9BWH6 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.92■■■□□ 2.54
RPAP1Q9BWH6 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
RPAP1Q9BWH6 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
RPAP1Q9BWH6 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
RPAP1Q9BWH6 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.89■■■□□ 2.54
RPAP1Q9BWH6 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
RPAP1Q9BWH6 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
RPAP1Q9BWH6 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
RPAP1Q9BWH6 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
RPAP1Q9BWH6 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RPAP1Q9BWH6 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
RPAP1Q9BWH6 AC135983.2-203ENST00000454486 1613 ntBASIC30.87■■■□□ 2.53
RPAP1Q9BWH6 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
RPAP1Q9BWH6 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.87■■■□□ 2.53
RPAP1Q9BWH6 AP004833.2-201ENST00000532228 1454 ntBASIC30.87■■■□□ 2.53
RPAP1Q9BWH6 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RPAP1Q9BWH6 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
RPAP1Q9BWH6 GPX1-201ENST00000419349 1106 ntBASIC30.86■■■□□ 2.53
RPAP1Q9BWH6 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
RPAP1Q9BWH6 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
RPAP1Q9BWH6 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.85■■■□□ 2.53
RPAP1Q9BWH6 ABHD17AP5-201ENST00000580133 923 ntBASIC30.85■■■□□ 2.53
RPAP1Q9BWH6 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
RPAP1Q9BWH6 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.83■■■□□ 2.53
RPAP1Q9BWH6 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.83■■■□□ 2.53
RPAP1Q9BWH6 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
RPAP1Q9BWH6 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
RPAP1Q9BWH6 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
RPAP1Q9BWH6 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
RPAP1Q9BWH6 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
RPAP1Q9BWH6 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
RPAP1Q9BWH6 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.81■■■□□ 2.52
RPAP1Q9BWH6 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP1Q9BWH6 RNF126P1-201ENST00000567452 1320 ntBASIC30.8■■■□□ 2.52
RPAP1Q9BWH6 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP1Q9BWH6 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP1Q9BWH6 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
RPAP1Q9BWH6 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.79■■■□□ 2.52
RPAP1Q9BWH6 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.79■■■□□ 2.52
RPAP1Q9BWH6 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
RPAP1Q9BWH6 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.78■■■□□ 2.52
RPAP1Q9BWH6 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.78■■■□□ 2.52
RPAP1Q9BWH6 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
RPAP1Q9BWH6 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.78■■■□□ 2.52
RPAP1Q9BWH6 WHAMMP2-203ENST00000563942 1603 ntBASIC30.78■■■□□ 2.52
RPAP1Q9BWH6 DRD5P2-201ENST00000421395 2012 ntBASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 AC008813.1-201ENST00000536597 885 ntBASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
RPAP1Q9BWH6 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
RPAP1Q9BWH6 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
RPAP1Q9BWH6 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
RPAP1Q9BWH6 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
RPAP1Q9BWH6 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.75■■■□□ 2.51
RPAP1Q9BWH6 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
RPAP1Q9BWH6 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
RPAP1Q9BWH6 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.74■■■□□ 2.51
RPAP1Q9BWH6 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.73■■■□□ 2.51
RPAP1Q9BWH6 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
RPAP1Q9BWH6 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
RPAP1Q9BWH6 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
RPAP1Q9BWH6 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.72■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms