Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PTCHD3Q3KNS1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.83■■□□□ 1.57
PTCHD3Q3KNS1 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
PTCHD3Q3KNS1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
PTCHD3Q3KNS1 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
PTCHD3Q3KNS1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 DUX4L11-201ENST00000611504 1267 ntBASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 DUX4L12-201ENST00000614593 1267 ntBASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 DUX4L14-201ENST00000621227 1267 ntBASIC24.82■■□□□ 1.56
PTCHD3Q3KNS1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PTCHD3Q3KNS1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.8■■□□□ 1.56
PTCHD3Q3KNS1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.79■■□□□ 1.56
PTCHD3Q3KNS1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PTCHD3Q3KNS1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.78■■□□□ 1.56
PTCHD3Q3KNS1 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.78■■□□□ 1.56
PTCHD3Q3KNS1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
PTCHD3Q3KNS1 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PTCHD3Q3KNS1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.78■■□□□ 1.56
PTCHD3Q3KNS1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 MIR3648-2-201ENST00000581792 180 ntBASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 AC016575.1-201ENST00000607026 382 ntBASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 MIR3648-1-201ENST00000615959 180 ntBASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.77■■□□□ 1.56
PTCHD3Q3KNS1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.76■■□□□ 1.55
PTCHD3Q3KNS1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PTCHD3Q3KNS1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PTCHD3Q3KNS1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.75■■□□□ 1.55
PTCHD3Q3KNS1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCHD3Q3KNS1 CR559946.2-201ENST00000623684 991 ntBASIC24.75■■□□□ 1.55
PTCHD3Q3KNS1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCHD3Q3KNS1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCHD3Q3KNS1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PTCHD3Q3KNS1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
PTCHD3Q3KNS1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.73■■□□□ 1.55
PTCHD3Q3KNS1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCHD3Q3KNS1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCHD3Q3KNS1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
PTCHD3Q3KNS1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
PTCHD3Q3KNS1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCHD3Q3KNS1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
PTCHD3Q3KNS1 AP002414.2-202ENST00000590929 1450 ntBASIC24.71■■□□□ 1.55
PTCHD3Q3KNS1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCHD3Q3KNS1 MIR639-201ENST00000384974 98 ntBASIC24.71■■□□□ 1.55
PTCHD3Q3KNS1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PTCHD3Q3KNS1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.55
PTCHD3Q3KNS1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
PTCHD3Q3KNS1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.7■■□□□ 1.54
PTCHD3Q3KNS1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCHD3Q3KNS1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCHD3Q3KNS1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCHD3Q3KNS1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.67■■□□□ 1.54
PTCHD3Q3KNS1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.67■■□□□ 1.54
PTCHD3Q3KNS1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
PTCHD3Q3KNS1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCHD3Q3KNS1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCHD3Q3KNS1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.66■■□□□ 1.54
PTCHD3Q3KNS1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PTCHD3Q3KNS1 MIR4449-201ENST00000578365 66 ntBASIC24.66■■□□□ 1.54
PTCHD3Q3KNS1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCHD3Q3KNS1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.65■■□□□ 1.54
PTCHD3Q3KNS1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L13-201ENST00000554103 1267 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L15-201ENST00000611059 1267 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L23-201ENST00000615195 1269 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L24-201ENST00000617576 1269 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L22-201ENST00000618238 1269 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L20-201ENST00000619712 1269 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L21-201ENST00000622058 1269 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L10-201ENST00000622460 1267 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 DUX4L25-201ENST00000624915 1269 ntBASIC24.64■■□□□ 1.54
PTCHD3Q3KNS1 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PTCHD3Q3KNS1 BX255925.1-201ENST00000566954 1854 ntBASIC24.64■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms