Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.31■■□□□ 1.8
SLC6A4P31645 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.31■■□□□ 1.8
SLC6A4P31645 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.31■■□□□ 1.8
SLC6A4P31645 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SLC6A4P31645 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SLC6A4P31645 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SLC6A4P31645 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SLC6A4P31645 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
SLC6A4P31645 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
SLC6A4P31645 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SLC6A4P31645 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SLC6A4P31645 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SLC6A4P31645 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC26.29■■□□□ 1.8
SLC6A4P31645 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SLC6A4P31645 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SLC6A4P31645 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
SLC6A4P31645 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SLC6A4P31645 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
SLC6A4P31645 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SLC6A4P31645 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SLC6A4P31645 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SLC6A4P31645 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SLC6A4P31645 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SLC6A4P31645 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.27■■□□□ 1.8
SLC6A4P31645 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SLC6A4P31645 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
SLC6A4P31645 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.26■■□□□ 1.79
SLC6A4P31645 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SLC6A4P31645 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.25■■□□□ 1.79
SLC6A4P31645 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
SLC6A4P31645 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
SLC6A4P31645 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SLC6A4P31645 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.24■■□□□ 1.79
SLC6A4P31645 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.24■■□□□ 1.79
SLC6A4P31645 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
SLC6A4P31645 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
SLC6A4P31645 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SLC6A4P31645 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SLC6A4P31645 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.23■■□□□ 1.79
SLC6A4P31645 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SLC6A4P31645 AC008813.1-201ENST00000536597 885 ntBASIC26.22■■□□□ 1.79
SLC6A4P31645 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
SLC6A4P31645 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SLC6A4P31645 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.21■■□□□ 1.79
SLC6A4P31645 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.21■■□□□ 1.79
SLC6A4P31645 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SLC6A4P31645 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
SLC6A4P31645 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
SLC6A4P31645 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SLC6A4P31645 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SLC6A4P31645 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SLC6A4P31645 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
SLC6A4P31645 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.18■■□□□ 1.78
SLC6A4P31645 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.17■■□□□ 1.78
SLC6A4P31645 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SLC6A4P31645 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SLC6A4P31645 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
SLC6A4P31645 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.17■■□□□ 1.78
SLC6A4P31645 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.17■■□□□ 1.78
SLC6A4P31645 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC26.17■■□□□ 1.78
SLC6A4P31645 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.16■■□□□ 1.78
SLC6A4P31645 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SLC6A4P31645 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SLC6A4P31645 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
SLC6A4P31645 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
SLC6A4P31645 CHST11-203ENST00000547956 936 ntTSL 2 BASIC26.15■■□□□ 1.78
SLC6A4P31645 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.15■■□□□ 1.78
SLC6A4P31645 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.15■■□□□ 1.78
SLC6A4P31645 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.15■■□□□ 1.78
SLC6A4P31645 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
SLC6A4P31645 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
SLC6A4P31645 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SLC6A4P31645 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SLC6A4P31645 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.13■■□□□ 1.77
SLC6A4P31645 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
SLC6A4P31645 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SLC6A4P31645 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
SLC6A4P31645 AC148477.6-201ENST00000623746 465 ntBASIC26.11■■□□□ 1.77
SLC6A4P31645 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
SLC6A4P31645 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
SLC6A4P31645 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.11■■□□□ 1.77
SLC6A4P31645 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SLC6A4P31645 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC26.1■■□□□ 1.77
SLC6A4P31645 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC26.1■■□□□ 1.77
SLC6A4P31645 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
SLC6A4P31645 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SLC6A4P31645 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.09■■□□□ 1.77
SLC6A4P31645 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
SLC6A4P31645 AP002414.2-202ENST00000590929 1450 ntBASIC26.09■■□□□ 1.77
SLC6A4P31645 MIR219A2-201ENST00000608502 1504 ntBASIC26.09■■□□□ 1.77
SLC6A4P31645 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms