Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SDCBPO00560 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.44■■□□□ 1.02
SDCBPO00560 AC135731.1-201ENST00000569415 2548 ntBASIC21.44■■□□□ 1.02
SDCBPO00560 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SDCBPO00560 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SDCBPO00560 AC127502.1-201ENST00000399971 1502 ntBASIC21.44■■□□□ 1.02
SDCBPO00560 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
SDCBPO00560 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SDCBPO00560 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDCBPO00560 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDCBPO00560 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
SDCBPO00560 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SDCBPO00560 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
SDCBPO00560 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
SDCBPO00560 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SDCBPO00560 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
SDCBPO00560 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
SDCBPO00560 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SDCBPO00560 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.41■■□□□ 1.02
SDCBPO00560 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SDCBPO00560 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.41■■□□□ 1.02
SDCBPO00560 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SDCBPO00560 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SDCBPO00560 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
SDCBPO00560 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.39■■□□□ 1.02
SDCBPO00560 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.39■■□□□ 1.02
SDCBPO00560 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SDCBPO00560 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.39■■□□□ 1.01
SDCBPO00560 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SDCBPO00560 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.38■■□□□ 1.01
SDCBPO00560 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.38■■□□□ 1.01
SDCBPO00560 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.38■■□□□ 1.01
SDCBPO00560 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SDCBPO00560 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SDCBPO00560 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.38■■□□□ 1.01
SDCBPO00560 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SDCBPO00560 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDCBPO00560 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.37■■□□□ 1.01
SDCBPO00560 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
SDCBPO00560 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SDCBPO00560 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDCBPO00560 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDCBPO00560 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SDCBPO00560 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SDCBPO00560 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.36■■□□□ 1.01
SDCBPO00560 AC100797.4-201ENST00000631653 1827 ntBASIC21.36■■□□□ 1.01
SDCBPO00560 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SDCBPO00560 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.36■■□□□ 1.01
SDCBPO00560 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.36■■□□□ 1.01
SDCBPO00560 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SDCBPO00560 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SDCBPO00560 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SDCBPO00560 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
SDCBPO00560 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SDCBPO00560 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.35■■□□□ 1.01
SDCBPO00560 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SDCBPO00560 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SDCBPO00560 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.34■■□□□ 1.01
SDCBPO00560 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SDCBPO00560 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SDCBPO00560 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SDCBPO00560 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.33■■□□□ 1.01
SDCBPO00560 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SDCBPO00560 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC21.33■■□□□ 1.01
SDCBPO00560 DUX4L28-201ENST00000623687 678 ntBASIC21.33■■□□□ 1.01
SDCBPO00560 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SDCBPO00560 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.32■■□□□ 1
SDCBPO00560 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.32■■□□□ 1
SDCBPO00560 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
SDCBPO00560 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC21.32■■□□□ 1
SDCBPO00560 MIR3665-201ENST00000578708 105 ntBASIC21.32■■□□□ 1
SDCBPO00560 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.31■■□□□ 1
SDCBPO00560 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SDCBPO00560 AL449106.1-201ENST00000608517 1980 ntBASIC21.31■■□□□ 1
SDCBPO00560 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.31■■□□□ 1
SDCBPO00560 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.31■■□□□ 1
SDCBPO00560 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SDCBPO00560 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.3■■□□□ 1
SDCBPO00560 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.3■■□□□ 1
SDCBPO00560 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SDCBPO00560 AP006261.1-201ENST00000584783 668 ntBASIC21.3■■□□□ 1
SDCBPO00560 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.3■■□□□ 1
SDCBPO00560 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.29■■□□□ 1
SDCBPO00560 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.29■■□□□ 1
SDCBPO00560 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SDCBPO00560 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.29■■□□□ 1
SDCBPO00560 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.29■■□□□ 1
SDCBPO00560 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.29■■□□□ 1
SDCBPO00560 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.29■■□□□ 1
SDCBPO00560 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SDCBPO00560 AC108673.1-201ENST00000510422 1159 ntBASIC21.28■■□□□ 1
SDCBPO00560 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SDCBPO00560 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SDCBPO00560 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC21.27■■□□□ 1
SDCBPO00560 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC21.27■■□□□ 1
SDCBPO00560 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SDCBPO00560 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SDCBPO00560 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
SDCBPO00560 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
SDCBPO00560 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms