Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX4Q9UIU6 IRX1P1-201ENST00000438849 1838 ntBASIC20.5■□□□□ 0.87
SIX4Q9UIU6 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AC145285.6-201ENST00000604632 637 ntBASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AL023803.3-201ENST00000615559 522 ntBASIC20.5■□□□□ 0.87
SIX4Q9UIU6 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.5■□□□□ 0.87
SIX4Q9UIU6 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 C2orf69P3-201ENST00000565542 1120 ntBASIC20.49■□□□□ 0.87
SIX4Q9UIU6 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
SIX4Q9UIU6 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.48■□□□□ 0.87
SIX4Q9UIU6 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SIX4Q9UIU6 LINC01568-207ENST00000641790 1380 ntBASIC20.47■□□□□ 0.87
SIX4Q9UIU6 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 EGLN1P1-201ENST00000531623 762 ntBASIC20.47■□□□□ 0.87
SIX4Q9UIU6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 FEM1AP3-201ENST00000403722 1741 ntBASIC20.47■□□□□ 0.87
SIX4Q9UIU6 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.47■□□□□ 0.87
SIX4Q9UIU6 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms