Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.87■□□□□ 0.29
MMP28Q9H239 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
MMP28Q9H239 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 AL031598.1-201ENST00000561511 1773 ntBASIC16.87■□□□□ 0.29
MMP28Q9H239 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
MMP28Q9H239 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MMP28Q9H239 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC16.86■□□□□ 0.29
MMP28Q9H239 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 GAS2L1P2-201ENST00000436355 1356 ntBASIC16.86■□□□□ 0.29
MMP28Q9H239 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
MMP28Q9H239 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.86■□□□□ 0.29
MMP28Q9H239 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MMP28Q9H239 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.86■□□□□ 0.29
MMP28Q9H239 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 TERF1P5-201ENST00000477545 1207 ntBASIC16.85■□□□□ 0.29
MMP28Q9H239 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC16.85■□□□□ 0.29
MMP28Q9H239 MFSD11-216ENST00000590393 1141 ntBASIC16.85■□□□□ 0.29
MMP28Q9H239 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 BID-214ENST00000617586 542 ntTSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
MMP28Q9H239 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
MMP28Q9H239 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.85■□□□□ 0.29
MMP28Q9H239 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.84■□□□□ 0.29
MMP28Q9H239 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.84■□□□□ 0.29
MMP28Q9H239 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.84■□□□□ 0.29
MMP28Q9H239 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.84■□□□□ 0.29
MMP28Q9H239 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MMP28Q9H239 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MMP28Q9H239 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.84■□□□□ 0.29
MMP28Q9H239 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms