Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 AC116562.4-201ENST00000641316 2276 ntBASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCGF1Q9BSM1 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 NIFKP9-201ENST00000419265 221 ntBASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 KRT18P16-201ENST00000510337 1294 ntBASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 AL353708.3-201ENST00000610272 989 ntBASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 AC073912.3-201ENST00000624414 853 ntBASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 AP000974.1-201ENST00000623909 2387 ntBASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.05■□□□□ 0.16
PCGF1Q9BSM1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 KRT16P1-201ENST00000399124 1418 ntBASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 KSR1P1-201ENST00000446298 240 ntBASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 AL355075.4-201ENST00000554988 638 ntBASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 C1QL1P1-201ENST00000568105 661 ntBASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCGF1Q9BSM1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 TNXA-203ENST00000507684 2038 ntBASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 BX088651.1-201ENST00000540551 451 ntBASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 REXO1L12P-201ENST00000622156 912 ntBASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PCGF1Q9BSM1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms