Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
NPAS1Q99742 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
NPAS1Q99742 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
NPAS1Q99742 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
NPAS1Q99742 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
NPAS1Q99742 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.45■□□□□ 0.38
NPAS1Q99742 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.45■□□□□ 0.38
NPAS1Q99742 TEX21P-204ENST00000641479 1693 ntBASIC17.45■□□□□ 0.38
NPAS1Q99742 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.45■□□□□ 0.38
NPAS1Q99742 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.45■□□□□ 0.38
NPAS1Q99742 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
NPAS1Q99742 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.45■□□□□ 0.38
NPAS1Q99742 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.45■□□□□ 0.38
NPAS1Q99742 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.45■□□□□ 0.38
NPAS1Q99742 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.45■□□□□ 0.38
NPAS1Q99742 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
NPAS1Q99742 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.45■□□□□ 0.38
NPAS1Q99742 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
NPAS1Q99742 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
NPAS1Q99742 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.44■□□□□ 0.38
NPAS1Q99742 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.44■□□□□ 0.38
NPAS1Q99742 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.44■□□□□ 0.38
NPAS1Q99742 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.44■□□□□ 0.38
NPAS1Q99742 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
NPAS1Q99742 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.44■□□□□ 0.38
NPAS1Q99742 NUDT16P1-203ENST00000513809 620 ntBASIC17.44■□□□□ 0.38
NPAS1Q99742 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.44■□□□□ 0.38
NPAS1Q99742 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.44■□□□□ 0.38
NPAS1Q99742 MIR4497-201ENST00000583208 89 ntBASIC17.44■□□□□ 0.38
NPAS1Q99742 AC026471.5-201ENST00000615068 467 ntBASIC17.44■□□□□ 0.38
NPAS1Q99742 AC131212.4-201ENST00000623606 975 ntBASIC17.44■□□□□ 0.38
NPAS1Q99742 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
NPAS1Q99742 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
NPAS1Q99742 RCC2P6-201ENST00000526625 1557 ntBASIC17.44■□□□□ 0.38
NPAS1Q99742 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.44■□□□□ 0.38
NPAS1Q99742 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.43■□□□□ 0.38
NPAS1Q99742 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.43■□□□□ 0.38
NPAS1Q99742 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.43■□□□□ 0.38
NPAS1Q99742 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.43■□□□□ 0.38
NPAS1Q99742 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.43■□□□□ 0.38
NPAS1Q99742 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.43■□□□□ 0.38
NPAS1Q99742 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.43■□□□□ 0.38
NPAS1Q99742 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.43■□□□□ 0.38
NPAS1Q99742 REXO1L10P-201ENST00000615707 1290 ntBASIC17.43■□□□□ 0.38
NPAS1Q99742 REXO1L12P-201ENST00000622156 912 ntBASIC17.43■□□□□ 0.38
NPAS1Q99742 AL031985.4-201ENST00000642138 673 ntBASIC17.43■□□□□ 0.38
NPAS1Q99742 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
NPAS1Q99742 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
NPAS1Q99742 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.43■□□□□ 0.38
NPAS1Q99742 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.42■□□□□ 0.38
NPAS1Q99742 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
NPAS1Q99742 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
NPAS1Q99742 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPAS1Q99742 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
NPAS1Q99742 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.42■□□□□ 0.38
NPAS1Q99742 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
NPAS1Q99742 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.42■□□□□ 0.38
NPAS1Q99742 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPAS1Q99742 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPAS1Q99742 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPAS1Q99742 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NPAS1Q99742 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.42■□□□□ 0.38
NPAS1Q99742 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
NPAS1Q99742 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms