Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ZNF558Q96NG5 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 HBZP1-201ENST00000354915 429 ntBASIC20.34■□□□□ 0.85
ZNF558Q96NG5 TPM4P1-201ENST00000436100 807 ntBASIC20.34■□□□□ 0.85
ZNF558Q96NG5 RASA4DP-201ENST00000460726 1199 ntBASIC20.34■□□□□ 0.85
ZNF558Q96NG5 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 AL137060.1-201ENST00000618151 2648 ntBASIC20.34■□□□□ 0.85
ZNF558Q96NG5 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ZNF558Q96NG5 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 ATP5G2P1-201ENST00000433580 426 ntBASIC20.33■□□□□ 0.85
ZNF558Q96NG5 SPDYE13P-201ENST00000445314 798 ntBASIC20.33■□□□□ 0.85
ZNF558Q96NG5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.33■□□□□ 0.85
ZNF558Q96NG5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ZNF558Q96NG5 GPAT2P1-201ENST00000444924 1672 ntBASIC20.32■□□□□ 0.84
ZNF558Q96NG5 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZNF558Q96NG5 AIRN-201ENST00000601203 4374 ntBASIC20.32■□□□□ 0.84
ZNF558Q96NG5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 SDHAP1-207ENST00000440850 2000 ntBASIC20.31■□□□□ 0.84
ZNF558Q96NG5 AL645929.1-201ENST00000420084 975 ntBASIC20.31■□□□□ 0.84
ZNF558Q96NG5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.31■□□□□ 0.84
ZNF558Q96NG5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms