Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.83□□□□□ -0.04
CCDC140Q96MF4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 RCC2P6-201ENST00000526625 1557 ntBASIC14.83□□□□□ -0.04
CCDC140Q96MF4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 SAPCD2P4-201ENST00000424595 1171 ntBASIC14.83□□□□□ -0.04
CCDC140Q96MF4 AC012618.2-201ENST00000428058 849 ntBASIC14.83□□□□□ -0.04
CCDC140Q96MF4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 USP36-216ENST00000589424 970 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 FP475955.4-201ENST00000623131 1990 ntBASIC14.83□□□□□ -0.04
CCDC140Q96MF4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 MME-217ENST00000616757 1315 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CCDC140Q96MF4 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 RPS2P55-201ENST00000397318 883 ntBASIC14.82□□□□□ -0.04
CCDC140Q96MF4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 FAM197Y1-201ENST00000421178 764 ntBASIC14.82□□□□□ -0.04
CCDC140Q96MF4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 AC107956.1-201ENST00000494359 873 ntBASIC14.82□□□□□ -0.04
CCDC140Q96MF4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 AL031985.4-201ENST00000642138 673 ntBASIC14.82□□□□□ -0.04
CCDC140Q96MF4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.82□□□□□ -0.04
CCDC140Q96MF4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.82□□□□□ -0.04
CCDC140Q96MF4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CCDC140Q96MF4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 FEM1AP3-201ENST00000403722 1741 ntBASIC14.81□□□□□ -0.04
CCDC140Q96MF4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 AC233702.5-201ENST00000584107 538 ntBASIC14.81□□□□□ -0.04
CCDC140Q96MF4 CD177P1-201ENST00000606252 935 ntBASIC14.81□□□□□ -0.04
CCDC140Q96MF4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC140Q96MF4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC140Q96MF4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms