Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 AC131212.4-201ENST00000623606 975 ntBASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC22.71■■□□□ 1.23
NKX2-3Q8TAU0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 AC011298.2-201ENST00000617989 482 ntBASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.7■■□□□ 1.22
NKX2-3Q8TAU0 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 C2orf69P3-201ENST00000565542 1120 ntBASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 AC026271.3-201ENST00000571884 352 ntBASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
NKX2-3Q8TAU0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 AK4P3-201ENST00000418260 669 ntBASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 KRT18P48-201ENST00000434763 852 ntBASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 BX664615.1-201ENST00000443558 458 ntBASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 AC022616.7-201ENST00000525383 220 ntBASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.68■■□□□ 1.22
NKX2-3Q8TAU0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 KRT8P11-201ENST00000409686 1436 ntBASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX2-3Q8TAU0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
NKX2-3Q8TAU0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC22.66■■□□□ 1.22
NKX2-3Q8TAU0 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.66■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms