Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
DEPDC4Q8N2C3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 AL390961.4-201ENST00000623958 2535 ntBASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 KRT18P68-201ENST00000392293 1000 ntBASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 AC098934.4-201ENST00000564127 592 ntBASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
DEPDC4Q8N2C3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 AC009113.1-201ENST00000570267 2443 ntBASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 AC135050.7-201ENST00000624508 2218 ntBASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 AC141586.3-201ENST00000562166 1838 ntBASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 TMEM191A-211ENST00000637163 1067 ntBASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
DEPDC4Q8N2C3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 AL355472.2-201ENST00000422958 438 ntBASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 TSPY20P-201ENST00000450910 630 ntBASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
DEPDC4Q8N2C3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
DEPDC4Q8N2C3 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
DEPDC4Q8N2C3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
DEPDC4Q8N2C3 AC090164.3-201ENST00000610780 2143 ntBASIC17.77■□□□□ 0.43
DEPDC4Q8N2C3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
DEPDC4Q8N2C3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms