Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
FOXA1P55317 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.55■□□□□ 0.56
FOXA1P55317 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
FOXA1P55317 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.55■□□□□ 0.56
FOXA1P55317 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.55■□□□□ 0.56
FOXA1P55317 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
FOXA1P55317 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
FOXA1P55317 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.55■□□□□ 0.56
FOXA1P55317 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
FOXA1P55317 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.55■□□□□ 0.56
FOXA1P55317 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.55■□□□□ 0.56
FOXA1P55317 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 AC092666.2-201ENST00000613287 246 ntBASIC18.55■□□□□ 0.56
FOXA1P55317 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.55■□□□□ 0.56
FOXA1P55317 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 Z98044.1-201ENST00000632503 1764 ntBASIC18.55■□□□□ 0.56
FOXA1P55317 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
FOXA1P55317 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
FOXA1P55317 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
FOXA1P55317 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
FOXA1P55317 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
FOXA1P55317 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA1P55317 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.54■□□□□ 0.56
FOXA1P55317 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA1P55317 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.54■□□□□ 0.56
FOXA1P55317 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA1P55317 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.54■□□□□ 0.56
FOXA1P55317 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.54■□□□□ 0.56
FOXA1P55317 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
FOXA1P55317 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.54■□□□□ 0.56
FOXA1P55317 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
FOXA1P55317 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
FOXA1P55317 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXA1P55317 AC005082.1-201ENST00000413042 2259 ntBASIC18.53■□□□□ 0.56
FOXA1P55317 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
FOXA1P55317 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA1P55317 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
FOXA1P55317 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
FOXA1P55317 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
FOXA1P55317 POM121L13P-201ENST00000422362 380 ntBASIC18.53■□□□□ 0.56
FOXA1P55317 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA1P55317 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.53■□□□□ 0.56
FOXA1P55317 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 AC008403.3-201ENST00000598924 454 ntBASIC18.53■□□□□ 0.56
FOXA1P55317 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXA1P55317 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA1P55317 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXA1P55317 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXA1P55317 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.52■□□□□ 0.56
FOXA1P55317 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
FOXA1P55317 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
FOXA1P55317 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.52■□□□□ 0.56
FOXA1P55317 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXA1P55317 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
FOXA1P55317 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.52■□□□□ 0.56
FOXA1P55317 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.52■□□□□ 0.56
FOXA1P55317 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.52■□□□□ 0.56
FOXA1P55317 AC090192.1-201ENST00000517740 490 ntBASIC18.52■□□□□ 0.56
FOXA1P55317 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.52■□□□□ 0.56
FOXA1P55317 UNC93B5-201ENST00000530315 699 ntBASIC18.52■□□□□ 0.56
FOXA1P55317 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms