Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LIG3P49916 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.06■□□□□ 0.8
LIG3P49916 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.06■□□□□ 0.8
LIG3P49916 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.06■□□□□ 0.8
LIG3P49916 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.06■□□□□ 0.8
LIG3P49916 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 AC069544.1-201ENST00000609399 999 ntBASIC20.06■□□□□ 0.8
LIG3P49916 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.06■□□□□ 0.8
LIG3P49916 DPP3P2-201ENST00000416030 1696 ntBASIC20.06■□□□□ 0.8
LIG3P49916 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIG3P49916 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.06■□□□□ 0.8
LIG3P49916 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LIG3P49916 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LIG3P49916 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.05■□□□□ 0.8
LIG3P49916 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LIG3P49916 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
LIG3P49916 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
LIG3P49916 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.05■□□□□ 0.8
LIG3P49916 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.05■□□□□ 0.8
LIG3P49916 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.05■□□□□ 0.8
LIG3P49916 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LIG3P49916 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIG3P49916 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 HLA-G-202ENST00000376815 851 ntBASIC20.04■□□□□ 0.8
LIG3P49916 HLA-G-203ENST00000376818 1127 ntBASIC20.04■□□□□ 0.8
LIG3P49916 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 GCSHP5-201ENST00000443090 522 ntBASIC20.04■□□□□ 0.8
LIG3P49916 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.04■□□□□ 0.8
LIG3P49916 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LIG3P49916 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.04■□□□□ 0.8
LIG3P49916 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIG3P49916 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.03■□□□□ 0.8
LIG3P49916 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.03■□□□□ 0.8
LIG3P49916 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.03■□□□□ 0.8
LIG3P49916 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
LIG3P49916 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.03■□□□□ 0.8
LIG3P49916 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIG3P49916 AL158047.1-201ENST00000445918 881 ntBASIC20.03■□□□□ 0.8
LIG3P49916 RPS2P52-201ENST00000469610 820 ntBASIC20.03■□□□□ 0.8
LIG3P49916 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LIG3P49916 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.03■□□□□ 0.8
LIG3P49916 AC142381.4-202ENST00000563973 229 ntBASIC20.03■□□□□ 0.8
LIG3P49916 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.03■□□□□ 0.8
LIG3P49916 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms