Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LHX1P48742 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.3■□□□□ 0.84
LHX1P48742 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LHX1P48742 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.3■□□□□ 0.84
LHX1P48742 AL137013.1-201ENST00000432946 1228 ntBASIC20.3■□□□□ 0.84
LHX1P48742 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LHX1P48742 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.3■□□□□ 0.84
LHX1P48742 FAM87A-204ENST00000613235 858 ntBASIC20.3■□□□□ 0.84
LHX1P48742 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LHX1P48742 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LHX1P48742 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.3■□□□□ 0.84
LHX1P48742 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LHX1P48742 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
LHX1P48742 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.3■□□□□ 0.84
LHX1P48742 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LHX1P48742 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.29■□□□□ 0.84
LHX1P48742 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
LHX1P48742 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.29■□□□□ 0.84
LHX1P48742 AC005521.1-201ENST00000393351 872 ntBASIC20.29■□□□□ 0.84
LHX1P48742 HMGA1P5-201ENST00000412453 271 ntBASIC20.29■□□□□ 0.84
LHX1P48742 KRT18P21-201ENST00000515767 1272 ntBASIC20.29■□□□□ 0.84
LHX1P48742 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
LHX1P48742 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LHX1P48742 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.29■□□□□ 0.84
LHX1P48742 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.29■□□□□ 0.84
LHX1P48742 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.29■□□□□ 0.84
LHX1P48742 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LHX1P48742 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.28■□□□□ 0.84
LHX1P48742 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.28■□□□□ 0.84
LHX1P48742 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 AC092865.7-201ENST00000641832 219 ntBASIC20.28■□□□□ 0.84
LHX1P48742 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LHX1P48742 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LHX1P48742 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
LHX1P48742 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX1P48742 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
LHX1P48742 AIRN-201ENST00000601203 4374 ntBASIC20.27■□□□□ 0.84
LHX1P48742 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LHX1P48742 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LHX1P48742 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
LHX1P48742 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
LHX1P48742 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LHX1P48742 TERF1P1-201ENST00000311003 1181 ntBASIC20.27■□□□□ 0.84
LHX1P48742 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.27■□□□□ 0.84
LHX1P48742 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.27■□□□□ 0.84
LHX1P48742 LIN28AP1-201ENST00000429574 405 ntBASIC20.27■□□□□ 0.84
LHX1P48742 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.27■□□□□ 0.84
LHX1P48742 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LHX1P48742 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
LHX1P48742 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.27■□□□□ 0.84
LHX1P48742 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.27■□□□□ 0.84
LHX1P48742 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LHX1P48742 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LHX1P48742 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
LHX1P48742 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.27■□□□□ 0.83
LHX1P48742 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.27■□□□□ 0.83
LHX1P48742 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LHX1P48742 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX1P48742 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
LHX1P48742 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LHX1P48742 TEX21P-204ENST00000641479 1693 ntBASIC20.26■□□□□ 0.83
LHX1P48742 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.26■□□□□ 0.83
LHX1P48742 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.26■□□□□ 0.83
LHX1P48742 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX1P48742 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LHX1P48742 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX1P48742 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.26■□□□□ 0.83
LHX1P48742 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LHX1P48742 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LHX1P48742 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LHX1P48742 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.26■□□□□ 0.83
LHX1P48742 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms