Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.93■□□□□ 0.78
PTPN9P43378 AC008040.2-201ENST00000461049 708 ntBASIC19.93■□□□□ 0.78
PTPN9P43378 PRSS44-201ENST00000515154 1146 ntBASIC19.93■□□□□ 0.78
PTPN9P43378 AL049812.1-201ENST00000432563 2267 ntBASIC19.93■□□□□ 0.78
PTPN9P43378 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.93■□□□□ 0.78
PTPN9P43378 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.93■□□□□ 0.78
PTPN9P43378 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.93■□□□□ 0.78
PTPN9P43378 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.93■□□□□ 0.78
PTPN9P43378 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PTPN9P43378 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
PTPN9P43378 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PTPN9P43378 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.92■□□□□ 0.78
PTPN9P43378 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.92■□□□□ 0.78
PTPN9P43378 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.92■□□□□ 0.78
PTPN9P43378 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.92■□□□□ 0.78
PTPN9P43378 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.92■□□□□ 0.78
PTPN9P43378 AP006294.2-201ENST00000641667 209 ntBASIC19.92■□□□□ 0.78
PTPN9P43378 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.92■□□□□ 0.78
PTPN9P43378 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.92■□□□□ 0.78
PTPN9P43378 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.92■□□□□ 0.78
PTPN9P43378 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.92■□□□□ 0.78
PTPN9P43378 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PTPN9P43378 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.91■□□□□ 0.78
PTPN9P43378 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.91■□□□□ 0.78
PTPN9P43378 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
PTPN9P43378 AP000974.1-201ENST00000623909 2387 ntBASIC19.91■□□□□ 0.78
PTPN9P43378 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.91■□□□□ 0.78
PTPN9P43378 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.91■□□□□ 0.78
PTPN9P43378 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
PTPN9P43378 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.91■□□□□ 0.78
PTPN9P43378 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.91■□□□□ 0.78
PTPN9P43378 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
PTPN9P43378 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
PTPN9P43378 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PTPN9P43378 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
PTPN9P43378 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
PTPN9P43378 FAM207BP-201ENST00000447172 505 ntBASIC19.9■□□□□ 0.78
PTPN9P43378 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.9■□□□□ 0.78
PTPN9P43378 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.9■□□□□ 0.78
PTPN9P43378 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PTPN9P43378 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
PTPN9P43378 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTPN9P43378 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PTPN9P43378 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms