Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.07
HLA-DMBP28068 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC14.58□□□□□ -0.07
HLA-DMBP28068 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 KRT18P29-201ENST00000397031 1267 ntBASIC14.58□□□□□ -0.08
HLA-DMBP28068 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 AL121906.2-201ENST00000621597 723 ntBASIC14.58□□□□□ -0.08
HLA-DMBP28068 HLA-B-256ENST00000639848 1089 ntBASIC14.58□□□□□ -0.08
HLA-DMBP28068 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC14.58□□□□□ -0.08
HLA-DMBP28068 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DMBP28068 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.57□□□□□ -0.08
HLA-DMBP28068 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 FP475955.4-201ENST00000623131 1990 ntBASIC14.57□□□□□ -0.08
HLA-DMBP28068 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 ESRRAP1-201ENST00000400596 1257 ntBASIC14.57□□□□□ -0.08
HLA-DMBP28068 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 YBX1P10-201ENST00000444752 975 ntBASIC14.57□□□□□ -0.08
HLA-DMBP28068 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
HLA-DMBP28068 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 KRT8P8-201ENST00000434750 1448 ntBASIC14.57□□□□□ -0.08
HLA-DMBP28068 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DMBP28068 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AC007613.1-201ENST00000572811 2597 ntBASIC14.56□□□□□ -0.08
HLA-DMBP28068 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 OR2A1-AS1-207ENST00000486094 819 ntBASIC14.56□□□□□ -0.08
HLA-DMBP28068 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC14.56□□□□□ -0.08
HLA-DMBP28068 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms