Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.24■□□□□ 0.67
VIMP08670 AC091305.1-201ENST00000479476 895 ntBASIC19.24■□□□□ 0.67
VIMP08670 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.24■□□□□ 0.67
VIMP08670 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.24■□□□□ 0.67
VIMP08670 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.24■□□□□ 0.67
VIMP08670 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VIMP08670 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VIMP08670 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.23■□□□□ 0.67
VIMP08670 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.23■□□□□ 0.67
VIMP08670 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
VIMP08670 MIR6084-201ENST00000622012 110 ntBASIC19.23■□□□□ 0.67
VIMP08670 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VIMP08670 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.23■□□□□ 0.67
VIMP08670 IRX1P1-201ENST00000438849 1838 ntBASIC19.23■□□□□ 0.67
VIMP08670 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VIMP08670 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.23■□□□□ 0.67
VIMP08670 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VIMP08670 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.22■□□□□ 0.67
VIMP08670 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
VIMP08670 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 SLC7A5P1-201ENST00000568957 537 ntBASIC19.22■□□□□ 0.67
VIMP08670 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.22■□□□□ 0.67
VIMP08670 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.22■□□□□ 0.67
VIMP08670 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VIMP08670 AC106820.2-201ENST00000563775 3264 ntBASIC19.22■□□□□ 0.67
VIMP08670 AC139713.2-201ENST00000641328 2723 ntBASIC19.22■□□□□ 0.67
VIMP08670 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VIMP08670 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.22■□□□□ 0.67
VIMP08670 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
VIMP08670 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.21■□□□□ 0.67
VIMP08670 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VIMP08670 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
VIMP08670 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
VIMP08670 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.21■□□□□ 0.67
VIMP08670 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.21■□□□□ 0.67
VIMP08670 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.21■□□□□ 0.67
VIMP08670 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
VIMP08670 AC019069.1-201ENST00000610008 1333 ntBASIC19.21■□□□□ 0.67
VIMP08670 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VIMP08670 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VIMP08670 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VIMP08670 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.2■□□□□ 0.66
VIMP08670 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms