Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 HOMER2P1-201ENST00000455653 964 ntBASIC22.58■■□□□ 1.21
HLA-DOAP06340 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.58■■□□□ 1.21
HLA-DOAP06340 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
HLA-DOAP06340 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
HLA-DOAP06340 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
HLA-DOAP06340 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
HLA-DOAP06340 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.58■■□□□ 1.2
HLA-DOAP06340 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
HLA-DOAP06340 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
HLA-DOAP06340 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
HLA-DOAP06340 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 MYC-208ENST00000641036 567 ntBASIC22.57■■□□□ 1.2
HLA-DOAP06340 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
HLA-DOAP06340 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC22.57■■□□□ 1.2
HLA-DOAP06340 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DOAP06340 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DOAP06340 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DOAP06340 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DOAP06340 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DOAP06340 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 AL441883.1-201ENST00000566170 1045 ntBASIC22.56■■□□□ 1.2
HLA-DOAP06340 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 TBC1D3P2-202ENST00000577902 1649 ntBASIC22.56■■□□□ 1.2
HLA-DOAP06340 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
HLA-DOAP06340 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC22.56■■□□□ 1.2
HLA-DOAP06340 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 Telomerase-vert.1-201ENST00000363312 438 ntBASIC22.55■■□□□ 1.2
HLA-DOAP06340 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 AC009947.2-201ENST00000444014 672 ntBASIC22.55■■□□□ 1.2
HLA-DOAP06340 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 CBFB-203ENST00000561924 584 ntTSL 5 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
HLA-DOAP06340 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.55■■□□□ 1.2
HLA-DOAP06340 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 NEK4P2-201ENST00000580004 1012 ntBASIC22.54■■□□□ 1.2
HLA-DOAP06340 MIR4674-201ENST00000582457 87 ntBASIC22.54■■□□□ 1.2
HLA-DOAP06340 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
HLA-DOAP06340 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
HLA-DOAP06340 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC22.54■■□□□ 1.2
HLA-DOAP06340 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms