Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
COL3A1P02461 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC25.36■■□□□ 1.65
COL3A1P02461 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL3A1P02461 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL3A1P02461 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
COL3A1P02461 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC25.36■■□□□ 1.65
COL3A1P02461 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
COL3A1P02461 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
COL3A1P02461 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 AL137013.1-201ENST00000432946 1228 ntBASIC25.35■■□□□ 1.65
COL3A1P02461 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
COL3A1P02461 NT5C-210ENST00000582160 860 ntTSL 2 BASIC25.35■■□□□ 1.65
COL3A1P02461 AC010331.1-201ENST00000611423 582 ntBASIC25.35■■□□□ 1.65
COL3A1P02461 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
COL3A1P02461 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
COL3A1P02461 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
COL3A1P02461 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
COL3A1P02461 FP475955.4-201ENST00000623131 1990 ntBASIC25.35■■□□□ 1.65
COL3A1P02461 AL032819.2-201ENST00000624543 2162 ntBASIC25.35■■□□□ 1.65
COL3A1P02461 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC25.35■■□□□ 1.65
COL3A1P02461 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC25.35■■□□□ 1.65
COL3A1P02461 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
COL3A1P02461 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC25.34■■□□□ 1.65
COL3A1P02461 AC117947.1-201ENST00000427448 529 ntBASIC25.34■■□□□ 1.65
COL3A1P02461 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
COL3A1P02461 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL3A1P02461 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
COL3A1P02461 UBQLN4P1-201ENST00000461599 1801 ntBASIC25.34■■□□□ 1.65
COL3A1P02461 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL3A1P02461 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC25.34■■□□□ 1.65
COL3A1P02461 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
COL3A1P02461 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC25.34■■□□□ 1.65
COL3A1P02461 BUB3-202ENST00000368859 667 ntTSL 3 BASIC25.34■■□□□ 1.65
COL3A1P02461 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC25.34■■□□□ 1.65
COL3A1P02461 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC25.34■■□□□ 1.65
COL3A1P02461 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC25.34■■□□□ 1.65
COL3A1P02461 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC25.34■■□□□ 1.65
COL3A1P02461 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
COL3A1P02461 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
COL3A1P02461 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC25.33■■□□□ 1.65
COL3A1P02461 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
COL3A1P02461 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC25.33■■□□□ 1.65
COL3A1P02461 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC25.33■■□□□ 1.65
COL3A1P02461 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.33■■□□□ 1.65
COL3A1P02461 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
COL3A1P02461 LTBR-211ENST00000543190 785 ntTSL 3 BASIC25.33■■□□□ 1.65
COL3A1P02461 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC25.33■■□□□ 1.65
COL3A1P02461 CR769767.2-201ENST00000622735 460 ntBASIC25.33■■□□□ 1.65
COL3A1P02461 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
COL3A1P02461 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 AC036111.1-201ENST00000533973 1582 ntBASIC25.32■■□□□ 1.64
COL3A1P02461 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC25.32■■□□□ 1.64
COL3A1P02461 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC25.32■■□□□ 1.64
COL3A1P02461 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
COL3A1P02461 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
COL3A1P02461 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC25.32■■□□□ 1.64
COL3A1P02461 CD70-202ENST00000423145 881 ntTSL 2 BASIC25.32■■□□□ 1.64
COL3A1P02461 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC25.32■■□□□ 1.64
COL3A1P02461 AC104076.2-201ENST00000448912 469 ntBASIC25.32■■□□□ 1.64
COL3A1P02461 AC007952.6-201ENST00000573168 2673 ntBASIC25.32■■□□□ 1.64
COL3A1P02461 AC003957.1-201ENST00000625108 2673 ntBASIC25.32■■□□□ 1.64
COL3A1P02461 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
COL3A1P02461 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC25.32■■□□□ 1.64
COL3A1P02461 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC25.31■■□□□ 1.64
COL3A1P02461 DUX4L26-201ENST00000489078 1255 ntBASIC25.31■■□□□ 1.64
COL3A1P02461 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC25.31■■□□□ 1.64
COL3A1P02461 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
COL3A1P02461 AC141257.4-201ENST00000634557 245 ntBASIC25.31■■□□□ 1.64
COL3A1P02461 AC136944.6-201ENST00000634818 245 ntBASIC25.31■■□□□ 1.64
COL3A1P02461 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
COL3A1P02461 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
COL3A1P02461 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms