Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 EDA-201ENST00000338901 1233 ntBASIC18.88■□□□□ 0.61
SNX3O60493 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 AC091305.1-201ENST00000479476 895 ntBASIC18.88■□□□□ 0.61
SNX3O60493 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX3O60493 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.88■□□□□ 0.61
SNX3O60493 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.88■□□□□ 0.61
SNX3O60493 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SNX3O60493 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.88■□□□□ 0.61
SNX3O60493 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX3O60493 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 AC116351.2-201ENST00000606540 1585 ntBASIC18.88■□□□□ 0.61
SNX3O60493 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.88■□□□□ 0.61
SNX3O60493 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX3O60493 FEM1AP3-201ENST00000403722 1741 ntBASIC18.88■□□□□ 0.61
SNX3O60493 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 SIRPAP1-201ENST00000448467 1770 ntBASIC18.88■□□□□ 0.61
SNX3O60493 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SNX3O60493 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX3O60493 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.88■□□□□ 0.61
SNX3O60493 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SNX3O60493 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SNX3O60493 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 GNAS-203ENST00000306120 1878 ntBASIC18.87■□□□□ 0.61
SNX3O60493 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.87■□□□□ 0.61
SNX3O60493 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.87■□□□□ 0.61
SNX3O60493 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.87■□□□□ 0.61
SNX3O60493 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.87■□□□□ 0.61
SNX3O60493 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SNX3O60493 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.87■□□□□ 0.61
SNX3O60493 AL591742.1-201ENST00000604433 565 ntBASIC18.87■□□□□ 0.61
SNX3O60493 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SNX3O60493 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
SNX3O60493 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SNX3O60493 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SNX3O60493 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.86■□□□□ 0.61
SNX3O60493 AC023632.3-201ENST00000521633 145 ntBASIC18.86■□□□□ 0.61
SNX3O60493 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.86■□□□□ 0.61
SNX3O60493 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SNX3O60493 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SNX3O60493 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SNX3O60493 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.85■□□□□ 0.61
SNX3O60493 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SNX3O60493 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SNX3O60493 AF213884.3-201ENST00000563833 479 ntBASIC18.85■□□□□ 0.61
SNX3O60493 MFSD11-216ENST00000590393 1141 ntBASIC18.85■□□□□ 0.61
SNX3O60493 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.85■□□□□ 0.61
SNX3O60493 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SNX3O60493 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms