Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 ARPP21-207ENST00000417925 3086 ntTSL 2 BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 AC091544.5-201ENST00000620192 3815 ntBASIC10.19□□□□□ -0.78
SENP3Q9H4L4 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
SENP3Q9H4L4 MFSD8-219ENST00000641228 2559 ntBASIC10.19□□□□□ -0.78
SENP3Q9H4L4 CCNB2-205ENST00000621385 2503 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 NEDD4L-204ENST00000382850 8251 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 RNA5SP85-201ENST00000365378 119 ntBASIC10.18□□□□□ -0.78
SENP3Q9H4L4 MIR152-201ENST00000385212 87 ntBASIC10.18□□□□□ -0.78
SENP3Q9H4L4 RPS29P14-201ENST00000431518 171 ntBASIC10.18□□□□□ -0.78
SENP3Q9H4L4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 AC018442.3-201ENST00000523025 183 ntBASIC10.18□□□□□ -0.78
SENP3Q9H4L4 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 TROVE2-205ENST00000367446 3081 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
SENP3Q9H4L4 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 LARS-212ENST00000510191 3737 ntTSL 2 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 MAP3K13-209ENST00000443863 3025 ntTSL 2 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AL356292.1-201ENST00000283110 373 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 MITF-203ENST00000328528 4680 ntTSL 5 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AP002088.1-201ENST00000382740 395 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 RNY1P6-201ENST00000384193 109 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AL391987.1-201ENST00000441025 200 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 H2AFZP5-201ENST00000446960 382 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 RN7SKP277-201ENST00000516895 283 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 MIR4712-201ENST00000583750 82 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AC097381.3-201ENST00000608962 462 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 MIR548BB-201ENST00000626714 66 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 CTDSPL-201ENST00000273179 4459 ntAPPRIS P4 TSL 1 (best) BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
SENP3Q9H4L4 AC073073.2-201ENST00000609827 2578 ntBASIC10.17□□□□□ -0.78
SENP3Q9H4L4 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 ZNF268-213ENST00000542986 3773 ntTSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 PALLD-206ENST00000505667 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 AL512624.2-201ENST00000621705 2566 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RNA5SP382-201ENST00000363355 112 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RNU6-1209P-201ENST00000363655 107 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RNY1P4-201ENST00000384595 115 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RNU6-1055P-201ENST00000391085 107 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 ANKRD54P1-201ENST00000433115 471 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 AL121578.2-201ENST00000448797 447 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RN7SL751P-201ENST00000473281 284 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 AL049873.1-201ENST00000480540 376 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RNU7-116P-201ENST00000516940 62 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RN7SKP11-201ENST00000517018 287 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 IGKV1OR22-1-201ENST00000521497 360 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 MIR548Z-201ENST00000584743 97 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 uc_338.4-201ENST00000616635 176 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 C4BPA-201ENST00000367070 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 MED13L-201ENST00000281928 14234 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 SALL1P1-201ENST00000438101 3837 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 SPATA31C2-201ENST00000324915 3777 ntBASIC10.16□□□□□ -0.78
SENP3Q9H4L4 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
SENP3Q9H4L4 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms