RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 NISCHQ9Y2I1 1504 aa13.94□□□□□ -0.18
SYNE1-213ENST00000448038 DCAF8L2P0C7V8 631 aa13.51□□□□□ -0.25
SYNE1-213ENST00000448038 SHROOM4Q9ULL8 1493 aa12.73□□□□□ -0.37
SYNE1-213ENST00000448038 SUPT5HO00267 1087 aaKnown RBP12.68□□□□□ -0.38
SYNE1-213ENST00000448038 EHMT2Q96KQ7 1210 aa12.05□□□□□ -0.48
SYNE1-213ENST00000448038 ABCC9O60706 1549 aa11.99□□□□□ -0.49
SYNE1-213ENST00000448038 FAM9AQ8IZU1 332 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-213ENST00000448038 TRIM41Q8WV44 630 aa11.81□□□□□ -0.52
SYNE1-213ENST00000448038 APLP2Q06481 763 aa11.73□□□□□ -0.53
SYNE1-213ENST00000448038 PABPN1Q86U42 306 aaKnown RBP eCLIP11.72□□□□□ -0.53
SYNE1-213ENST00000448038 CCDC180Q9P1Z9 1646 aa11.67□□□□□ -0.54
SYNE1-213ENST00000448038 RANGAP1P46060 587 aaPredicted RBP11.63□□□□□ -0.55
SYNE1-213ENST00000448038 TTBK1Q5TCY1 1321 aaPredicted RBP11.58□□□□□ -0.56
SYNE1-213ENST00000448038 UBTFP17480 764 aaKnown RBP11.58□□□□□ -0.56
SYNE1-213ENST00000448038 ZCCHC6Q5VYS8 1495 aaKnown RBP11.56□□□□□ -0.56
SYNE1-213ENST00000448038 ATP1B4Q9UN42 357 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-213ENST00000448038 CHIC1Q5VXU3 224 aa11.45□□□□□ -0.58
SYNE1-213ENST00000448038 SCRIBQ14160 1630 aa11.45□□□□□ -0.58
SYNE1-213ENST00000448038 PCGF6Q9BYE7 350 aa11.44□□□□□ -0.58
SYNE1-213ENST00000448038 LOC105371045A0A1W2PR82 267 aa11.32□□□□□ -0.6
SYNE1-213ENST00000448038 RB1CC1Q8TDY2 1594 aa11.32□□□□□ -0.6
SYNE1-213ENST00000448038 PPARGC1BQ86YN6 1023 aaKnown RBP11.28□□□□□ -0.6
SYNE1-213ENST00000448038 NACADO15069 1562 aa11.26□□□□□ -0.61
SYNE1-213ENST00000448038 CCER1Q8TC90 406 aaPredicted RBP11.22□□□□□ -0.61
SYNE1-213ENST00000448038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.19□□□□□ -0.62
SYNE1-213ENST00000448038 HNRNPUL2Q1KMD3 747 aaKnown RBP11.19□□□□□ -0.62
SYNE1-213ENST00000448038 ZEB1P37275 1124 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-213ENST00000448038 DCAF1Q9Y4B6 1507 aa11.13□□□□□ -0.63
SYNE1-213ENST00000448038 TRIM26Q12899 539 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-213ENST00000448038 ITGAEP38570 1179 aa11.08□□□□□ -0.64
SYNE1-213ENST00000448038 FBLN2P98095 1184 aa11.05□□□□□ -0.64
SYNE1-213ENST00000448038 RSF1Q96T23 1441 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-213ENST00000448038 MYT1LQ9UL68 1186 aa11.02□□□□□ -0.65
SYNE1-213ENST00000448038 CSRNP3Q8WYN3 585 aa11.02□□□□□ -0.65
SYNE1-213ENST00000448038 BAZ1BQ9UIG0 1483 aaKnown RBP10.94□□□□□ -0.66
SYNE1-213ENST00000448038 CECR2Q9BXF3 1484 aa10.93□□□□□ -0.66
SYNE1-213ENST00000448038 BAZ1AQ9NRL2 1556 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-213ENST00000448038 P3H3Q8IVL6 736 aa10.91□□□□□ -0.66
SYNE1-213ENST00000448038 FAM50AQ14320 339 aaKnown RBP10.9□□□□□ -0.66
SYNE1-213ENST00000448038 MYO15BQ96JP2 1530 aa10.88□□□□□ -0.67
SYNE1-213ENST00000448038 ARID3CA6NKF2 412 aa10.82□□□□□ -0.68
SYNE1-213ENST00000448038 PELP1Q8IZL8 1130 aaKnown RBP10.81□□□□□ -0.68
SYNE1-213ENST00000448038 HRCP23327 699 aa10.81□□□□□ -0.68
SYNE1-213ENST00000448038 MROH2BQ7Z745 1585 aa10.79□□□□□ -0.68
SYNE1-213ENST00000448038 WRNQ14191 1432 aaPredicted RBP eCLIP10.77□□□□□ -0.68
SYNE1-213ENST00000448038 TRIM52Q96A61 297 aa10.77□□□□□ -0.69
SYNE1-213ENST00000448038 CENPBP07199 599 aaPredicted RBP10.76□□□□□ -0.69
SYNE1-213ENST00000448038 CHMP7Q8WUX9 453 aaPredicted RBP10.73□□□□□ -0.69
SYNE1-213ENST00000448038 POLR3GLQ9BT43 218 aa10.73□□□□□ -0.69
SYNE1-213ENST00000448038 CDK11AQ9UQ88 783 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-213ENST00000448038 SMARCA2P51531 1590 aa10.72□□□□□ -0.69
SYNE1-213ENST00000448038 EEA1Q15075 1411 aa10.69□□□□□ -0.7
SYNE1-213ENST00000448038 YTHDC1Q96MU7 727 aaKnown RBP10.69□□□□□ -0.7
SYNE1-213ENST00000448038 ERCC6Q03468 1493 aa10.68□□□□□ -0.7
SYNE1-213ENST00000448038 ZNF777Q9ULD5 760 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-213ENST00000448038 CCDC88BA6NC98 1476 aa10.68□□□□□ -0.7
SYNE1-213ENST00000448038 NEUROD1Q13562 356 aa10.67□□□□□ -0.7
SYNE1-213ENST00000448038 KIF27Q86VH2 1401 aa10.66□□□□□ -0.7
SYNE1-213ENST00000448038 WIZO95785 1651 aa10.65□□□□□ -0.7
SYNE1-213ENST00000448038 CLIP1P30622 1438 aa10.63□□□□□ -0.71
SYNE1-213ENST00000448038 GOLGA3Q08378 1498 aa10.63□□□□□ -0.71
SYNE1-213ENST00000448038 NPM1P06748 294 aaKnown RBP eCLIP10.63□□□□□ -0.71
SYNE1-213ENST00000448038 TOP2AP11388 1531 aaKnown RBP10.61□□□□□ -0.71
SYNE1-213ENST00000448038 CNGB1Q14028 1251 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-213ENST00000448038 ATAD2BQ9ULI0 1458 aa10.6□□□□□ -0.71
SYNE1-213ENST00000448038 SMARCA4P51532 1647 aa10.6□□□□□ -0.71
SYNE1-213ENST00000448038 CEP164Q9UPV0 1460 aa10.57□□□□□ -0.72
SYNE1-213ENST00000448038 CEP162Q5TB80 1403 aa10.57□□□□□ -0.72
SYNE1-213ENST00000448038 ZNF326Q5BKZ1 582 aaKnown RBP10.56□□□□□ -0.72
SYNE1-213ENST00000448038 PDS5BQ9NTI5 1447 aa10.56□□□□□ -0.72
SYNE1-213ENST00000448038 MTUS2Q5JR59 1369 aa10.56□□□□□ -0.72
SYNE1-213ENST00000448038 NEFLP07196 543 aa10.56□□□□□ -0.72
SYNE1-213ENST00000448038 ABCC8Q09428 1581 aa10.55□□□□□ -0.72
SYNE1-213ENST00000448038 CUX2O14529 1486 aa10.55□□□□□ -0.72
SYNE1-213ENST00000448038 SLC4A1APQ9BWU0 796 aaKnown RBP10.55□□□□□ -0.72
SYNE1-213ENST00000448038 SOGA1O94964 1423 aa10.54□□□□□ -0.72
SYNE1-213ENST00000448038 TNIKQ9UKE5 1360 aa10.53□□□□□ -0.72
SYNE1-213ENST00000448038 CADPSQ9ULU8 1353 aa10.53□□□□□ -0.72
SYNE1-213ENST00000448038 CARMIL1Q5VZK9 1371 aa10.51□□□□□ -0.73
SYNE1-213ENST00000448038 DIEXFQ68CQ4 756 aaKnown RBP10.51□□□□□ -0.73
SYNE1-213ENST00000448038 CHIC2Q9UKJ5 165 aa10.5□□□□□ -0.73
SYNE1-213ENST00000448038 PLEKHD1A6NEE1 506 aa10.47□□□□□ -0.73
SYNE1-213ENST00000448038 TSPY4P0CV99 314 aa10.46□□□□□ -0.73
SYNE1-213ENST00000448038 TSPY10P0CW01 314 aa10.46□□□□□ -0.73
SYNE1-213ENST00000448038 KCNH8Q96L42 1107 aa10.46□□□□□ -0.73
SYNE1-213ENST00000448038 TDRD9Q8NDG6 1382 aaKnown RBP10.45□□□□□ -0.74
SYNE1-213ENST00000448038 ESF1Q9H501 851 aaKnown RBP10.45□□□□□ -0.74
SYNE1-213ENST00000448038 EIF4G1Q04637 1599 aaKnown RBP10.43□□□□□ -0.74
SYNE1-213ENST00000448038 BCANQ96GW7 911 aa10.42□□□□□ -0.74
SYNE1-213ENST00000448038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.42□□□□□ -0.74
SYNE1-213ENST00000448038 ZNF316A6NFI3 1004 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-213ENST00000448038 NCAPD3P42695 1498 aa10.39□□□□□ -0.75
SYNE1-213ENST00000448038 FANCD2Q9BXW9 1451 aa10.39□□□□□ -0.75
SYNE1-213ENST00000448038 TONSLQ96HA7 1378 aa10.39□□□□□ -0.75
SYNE1-213ENST00000448038 CHGAP10645 457 aaKnown RBP10.39□□□□□ -0.75
SYNE1-213ENST00000448038 RRP7BPQ9NSQ0 103 aa10.38□□□□□ -0.75
SYNE1-213ENST00000448038 FHAD1B1AJZ9 1412 aa10.37□□□□□ -0.75
SYNE1-213ENST00000448038 CFDP1Q9UEE9 299 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-213ENST00000448038 ANP32CO43423 234 aa10.37□□□□□ -0.75
SYNE1-213ENST00000448038 STAG3Q9UJ98 1225 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms