Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LRCH3Q96II8 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.53□□□□□ -1.36
LRCH3Q96II8 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.36
LRCH3Q96II8 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.52□□□□□ -1.36
LRCH3Q96II8 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 Y_RNA.143-201ENST00000363520 106 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 AL109941.1-201ENST00000401925 229 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 Y_RNA.602-201ENST00000410535 92 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 AC096921.1-201ENST00000411661 375 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 AL049745.1-201ENST00000433953 286 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 SYF2P1-201ENST00000550658 413 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 AL121917.1-203ENST00000605534 577 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 MIR7159-201ENST00000620587 66 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 MIR8080-201ENST00000622224 89 ntBASIC6.52□□□□□ -1.37
LRCH3Q96II8 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC6.52□□□□□ -1.37
LRCH3Q96II8 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LRCH3Q96II8 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC025809.2-201ENST00000625085 1802 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 RN7SKP128-201ENST00000364270 303 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 Y_RNA.292-201ENST00000364904 97 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 RNU6-45P-201ENST00000384471 107 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AP003170.5-201ENST00000397185 335 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC010154.1-201ENST00000425857 269 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 RPL7L1P9-201ENST00000431298 745 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 PPIAP3-201ENST00000450588 505 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 RN7SL738P-201ENST00000470264 297 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC022034.3-201ENST00000471393 478 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 HMGN2P13-201ENST00000476476 274 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC109479.2-201ENST00000517842 174 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC008962.1-201ENST00000605729 304 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 RNU6-85P-201ENST00000605989 107 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC108706.1-201ENST00000611053 297 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 GNL2P1-201ENST00000451274 2190 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AL109809.4-201ENST00000603520 2185 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
LRCH3Q96II8 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
LRCH3Q96II8 AL139384.2-201ENST00000613809 3590 ntBASIC6.51□□□□□ -1.37
LRCH3Q96II8 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.5□□□□□ -1.37
LRCH3Q96II8 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.5□□□□□ -1.37
LRCH3Q96II8 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LRCH3Q96II8 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
LRCH3Q96II8 AC012254.3-201ENST00000591183 2117 ntBASIC6.5□□□□□ -1.37
LRCH3Q96II8 AC034229.2-201ENST00000566945 2508 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms