Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.2■□□□□ 0.83
SMARCAL1Q9NZC9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 LTB4R2-202ENST00000528054 3092 ntBASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 AC006970.2-201ENST00000450065 779 ntBASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 AL354751.1-201ENST00000412768 1863 ntBASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMARCAL1Q9NZC9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCAL1Q9NZC9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 AC105036.2-201ENST00000569468 176 ntBASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 AC133552.2-202ENST00000575694 574 ntBASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SMARCAL1Q9NZC9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 AF201337.1-201ENST00000520239 748 ntBASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SMARCAL1Q9NZC9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms