Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 NIFKP9-201ENST00000419265 221 ntBASIC19.15■□□□□ 0.66
TREX1Q9NSU2 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 AL353708.3-201ENST00000610272 989 ntBASIC19.15■□□□□ 0.66
TREX1Q9NSU2 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TREX1Q9NSU2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.66
TREX1Q9NSU2 AL138781.2-201ENST00000617896 1843 ntBASIC19.14■□□□□ 0.65
TREX1Q9NSU2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 RPPH1-201ENST00000516869 333 ntBASIC19.14■□□□□ 0.65
TREX1Q9NSU2 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TREX1Q9NSU2 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 AC004980.1-204ENST00000429707 299 ntBASIC19.13■□□□□ 0.65
TREX1Q9NSU2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 HTR7P1-201ENST00000538670 1336 ntBASIC19.13■□□□□ 0.65
TREX1Q9NSU2 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TREX1Q9NSU2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 AC093525.10-201ENST00000625130 1569 ntBASIC19.12■□□□□ 0.65
TREX1Q9NSU2 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 ITM2C-210ENST00000620962 501 ntBASIC19.12■□□□□ 0.65
TREX1Q9NSU2 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TREX1Q9NSU2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TREX1Q9NSU2 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms