Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 AL671277.2-201ENST00000458060 996 ntBASIC22.68■■□□□ 1.22
DDX4Q9NQI0 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 GCSHP2-201ENST00000560971 527 ntBASIC22.68■■□□□ 1.22
DDX4Q9NQI0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 AL121956.5-201ENST00000625261 221 ntBASIC22.68■■□□□ 1.22
DDX4Q9NQI0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DDX4Q9NQI0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 GOLGA6L5P-202ENST00000515341 1828 ntBASIC22.67■■□□□ 1.22
DDX4Q9NQI0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 CR769767.2-201ENST00000622735 460 ntBASIC22.67■■□□□ 1.22
DDX4Q9NQI0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 AP000550.4-202ENST00000639755 178 ntBASIC22.67■■□□□ 1.22
DDX4Q9NQI0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.67■■□□□ 1.22
DDX4Q9NQI0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 AC125437.2-201ENST00000625180 2167 ntBASIC22.66■■□□□ 1.22
DDX4Q9NQI0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 ILF2-202ENST00000368681 726 ntTSL 2 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 PCED1CP-201ENST00000419887 785 ntBASIC22.66■■□□□ 1.22
DDX4Q9NQI0 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
DDX4Q9NQI0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 LINC01521-201ENST00000504184 1943 ntBASIC22.65■■□□□ 1.22
DDX4Q9NQI0 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 TSPY21P-201ENST00000433481 731 ntBASIC22.65■■□□□ 1.22
DDX4Q9NQI0 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 HYMAI.1-201ENST00000620949 238 ntBASIC22.65■■□□□ 1.22
DDX4Q9NQI0 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 PCDHAC2-203ENST00000615316 3011 ntBASIC22.65■■□□□ 1.22
DDX4Q9NQI0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
DDX4Q9NQI0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC22.64■■□□□ 1.22
DDX4Q9NQI0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
DDX4Q9NQI0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
DDX4Q9NQI0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.64■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms