Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 AL355075.4-201ENST00000554988 638 ntBASIC19.05■□□□□ 0.64
VPS35Q96QK1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 AC007952.6-201ENST00000573168 2673 ntBASIC19.05■□□□□ 0.64
VPS35Q96QK1 AC003957.1-201ENST00000625108 2673 ntBASIC19.05■□□□□ 0.64
VPS35Q96QK1 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 UNC93B2-201ENST00000285383 730 ntBASIC19.04■□□□□ 0.64
VPS35Q96QK1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 RBM17P1-201ENST00000453646 1190 ntBASIC19.04■□□□□ 0.64
VPS35Q96QK1 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 AP000692.2-201ENST00000608391 879 ntBASIC19.04■□□□□ 0.64
VPS35Q96QK1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS35Q96QK1 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS35Q96QK1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 TSPY21P-201ENST00000433481 731 ntBASIC19.03■□□□□ 0.64
VPS35Q96QK1 FAM207BP-201ENST00000447172 505 ntBASIC19.03■□□□□ 0.64
VPS35Q96QK1 AC008040.2-201ENST00000461049 708 ntBASIC19.03■□□□□ 0.64
VPS35Q96QK1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS35Q96QK1 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS35Q96QK1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS35Q96QK1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.02■□□□□ 0.64
VPS35Q96QK1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms