Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 FP475955.4-201ENST00000623131 1990 ntBASIC14.38□□□□□ -0.11
LINC00477Q96M19 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.38□□□□□ -0.11
LINC00477Q96M19 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LINC00477Q96M19 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 OR2A1-AS1-207ENST00000486094 819 ntBASIC14.37□□□□□ -0.11
LINC00477Q96M19 KRT18P16-201ENST00000510337 1294 ntBASIC14.37□□□□□ -0.11
LINC00477Q96M19 PNMA6B-201ENST00000538162 1200 ntBASIC14.37□□□□□ -0.11
LINC00477Q96M19 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
LINC00477Q96M19 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LINC00477Q96M19 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 HTR7P1-202ENST00000624664 4411 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 NCF1B-203ENST00000435988 1254 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 TSPY6P-201ENST00000448518 926 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 PPP1R14BP3-201ENST00000509033 445 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 MYC-209ENST00000641252 345 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 IRX1P1-201ENST00000438849 1838 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 SDHAP1-207ENST00000440850 2000 ntBASIC14.36□□□□□ -0.11
LINC00477Q96M19 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.36□□□□□ -0.11
LINC00477Q96M19 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LINC00477Q96M19 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
LINC00477Q96M19 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LINC00477Q96M19 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms