Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 AC008550.1-201ENST00000511500 884 ntBASIC18.35■□□□□ 0.53
VMP1Q96GC9 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VMP1Q96GC9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VMP1Q96GC9 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.34■□□□□ 0.53
VMP1Q96GC9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 MIR718-201ENST00000390190 70 ntBASIC18.34■□□□□ 0.53
VMP1Q96GC9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 KRT16P5-201ENST00000455284 522 ntBASIC18.34■□□□□ 0.53
VMP1Q96GC9 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.34■□□□□ 0.53
VMP1Q96GC9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VMP1Q96GC9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.33■□□□□ 0.53
VMP1Q96GC9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.33■□□□□ 0.53
VMP1Q96GC9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
VMP1Q96GC9 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 AP001271.2-201ENST00000624018 1556 ntBASIC18.33■□□□□ 0.52
VMP1Q96GC9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VMP1Q96GC9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VMP1Q96GC9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 AL135905.2-201ENST00000584934 1404 ntBASIC18.32■□□□□ 0.52
VMP1Q96GC9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
VMP1Q96GC9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VMP1Q96GC9 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms