Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 FP475955.4-201ENST00000623131 1990 ntBASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CLRN3Q8NCR9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN3Q8NCR9 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 AL451085.2-201ENST00000605085 799 ntBASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN3Q8NCR9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN3Q8NCR9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms