Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
USP48Q86UV5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
USP48Q86UV5 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
USP48Q86UV5 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC23.5■■□□□ 1.35
USP48Q86UV5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC23.5■■□□□ 1.35
USP48Q86UV5 AL121956.5-201ENST00000625261 221 ntBASIC23.5■■□□□ 1.35
USP48Q86UV5 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.5■■□□□ 1.35
USP48Q86UV5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
USP48Q86UV5 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
USP48Q86UV5 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.5■■□□□ 1.35
USP48Q86UV5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
USP48Q86UV5 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
USP48Q86UV5 AL158211.5-201ENST00000623583 2518 ntBASIC23.5■■□□□ 1.35
USP48Q86UV5 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
USP48Q86UV5 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC23.49■■□□□ 1.35
USP48Q86UV5 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC23.49■■□□□ 1.35
USP48Q86UV5 PP7080-204ENST00000510714 601 ntTSL 3 BASIC23.49■■□□□ 1.35
USP48Q86UV5 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.49■■□□□ 1.35
USP48Q86UV5 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.49■■□□□ 1.35
USP48Q86UV5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 KRT8P17-201ENST00000453110 1448 ntBASIC23.49■■□□□ 1.35
USP48Q86UV5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
USP48Q86UV5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
USP48Q86UV5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
USP48Q86UV5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC23.49■■□□□ 1.35
USP48Q86UV5 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.49■■□□□ 1.35
USP48Q86UV5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC23.49■■□□□ 1.35
USP48Q86UV5 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP48Q86UV5 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.48■■□□□ 1.35
USP48Q86UV5 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
USP48Q86UV5 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP48Q86UV5 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.48■■□□□ 1.35
USP48Q86UV5 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USP48Q86UV5 AC011298.2-201ENST00000617989 482 ntBASIC23.48■■□□□ 1.35
USP48Q86UV5 AC141257.4-201ENST00000634557 245 ntBASIC23.48■■□□□ 1.35
USP48Q86UV5 AC136944.6-201ENST00000634818 245 ntBASIC23.48■■□□□ 1.35
USP48Q86UV5 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
USP48Q86UV5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
USP48Q86UV5 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC23.48■■□□□ 1.35
USP48Q86UV5 RCC2P6-201ENST00000526625 1557 ntBASIC23.48■■□□□ 1.35
USP48Q86UV5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
USP48Q86UV5 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC23.47■■□□□ 1.35
USP48Q86UV5 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
USP48Q86UV5 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.47■■□□□ 1.35
USP48Q86UV5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC23.47■■□□□ 1.35
USP48Q86UV5 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 MFAP1P1-201ENST00000442257 1255 ntBASIC23.47■■□□□ 1.35
USP48Q86UV5 CCR12P-201ENST00000446203 998 ntBASIC23.47■■□□□ 1.35
USP48Q86UV5 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC23.47■■□□□ 1.35
USP48Q86UV5 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC23.47■■□□□ 1.35
USP48Q86UV5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC23.47■■□□□ 1.35
USP48Q86UV5 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
USP48Q86UV5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
USP48Q86UV5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.47■■□□□ 1.35
USP48Q86UV5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
USP48Q86UV5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
USP48Q86UV5 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP48Q86UV5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.46■■□□□ 1.35
USP48Q86UV5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC23.46■■□□□ 1.35
USP48Q86UV5 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC23.46■■□□□ 1.35
USP48Q86UV5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
USP48Q86UV5 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.46■■□□□ 1.35
USP48Q86UV5 AC007663.1-201ENST00000438948 1240 ntBASIC23.46■■□□□ 1.35
USP48Q86UV5 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
USP48Q86UV5 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
USP48Q86UV5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC23.46■■□□□ 1.35
USP48Q86UV5 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP48Q86UV5 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.46■■□□□ 1.35
USP48Q86UV5 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP48Q86UV5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
USP48Q86UV5 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
USP48Q86UV5 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms