Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.43■□□□□ 0.38
USP43Q70EL4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.43■□□□□ 0.38
USP43Q70EL4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.43■□□□□ 0.38
USP43Q70EL4 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.43■□□□□ 0.38
USP43Q70EL4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.43■□□□□ 0.38
USP43Q70EL4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.42■□□□□ 0.38
USP43Q70EL4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 AC093525.10-201ENST00000625130 1569 ntBASIC17.42■□□□□ 0.38
USP43Q70EL4 KRT16P2-201ENST00000414673 1423 ntBASIC17.42■□□□□ 0.38
USP43Q70EL4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 AC007322.1-201ENST00000426983 750 ntBASIC17.42■□□□□ 0.38
USP43Q70EL4 TSPY6P-201ENST00000448518 926 ntBASIC17.42■□□□□ 0.38
USP43Q70EL4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.42■□□□□ 0.38
USP43Q70EL4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
USP43Q70EL4 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP43Q70EL4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.42■□□□□ 0.38
USP43Q70EL4 MKRN4P-201ENST00000444706 1521 ntBASIC17.42■□□□□ 0.38
USP43Q70EL4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.41■□□□□ 0.38
USP43Q70EL4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
USP43Q70EL4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP43Q70EL4 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.41■□□□□ 0.38
USP43Q70EL4 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.41■□□□□ 0.38
USP43Q70EL4 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP43Q70EL4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.41■□□□□ 0.38
USP43Q70EL4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.41■□□□□ 0.38
USP43Q70EL4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.41■□□□□ 0.38
USP43Q70EL4 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.41■□□□□ 0.38
USP43Q70EL4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.41■□□□□ 0.38
USP43Q70EL4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.41■□□□□ 0.38
USP43Q70EL4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.41■□□□□ 0.38
USP43Q70EL4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.41■□□□□ 0.38
USP43Q70EL4 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP43Q70EL4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.4■□□□□ 0.38
USP43Q70EL4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.4■□□□□ 0.38
USP43Q70EL4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.4■□□□□ 0.38
USP43Q70EL4 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.4■□□□□ 0.38
USP43Q70EL4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
USP43Q70EL4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.4■□□□□ 0.38
USP43Q70EL4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
USP43Q70EL4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP43Q70EL4 DUX4L16-201ENST00000555130 1264 ntBASIC17.4■□□□□ 0.38
USP43Q70EL4 KRT18P6-201ENST00000555540 1265 ntBASIC17.4■□□□□ 0.38
USP43Q70EL4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms