Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 AC128676.1-201ENST00000454392 318 ntBASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 AC133681.1-201ENST00000465482 601 ntBASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.05■□□□□ 0.64
ZNF549Q6P9A3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 IRX1P1-201ENST00000438849 1838 ntBASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 POU5F1P3-201ENST00000428824 1078 ntBASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ZNF549Q6P9A3 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 KRT16P5-201ENST00000455284 522 ntBASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.03■□□□□ 0.64
ZNF549Q6P9A3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 AC006333.2-201ENST00000607957 2099 ntBASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 AL160286.2-201ENST00000567150 934 ntBASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.02■□□□□ 0.64
ZNF549Q6P9A3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
ZNF549Q6P9A3 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF549Q6P9A3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF549Q6P9A3 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.02■□□□□ 0.63
ZNF549Q6P9A3 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
ZNF549Q6P9A3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF549Q6P9A3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
ZNF549Q6P9A3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
ZNF549Q6P9A3 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
ZNF549Q6P9A3 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms