Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 Z69720.1-201ENST00000601483 472 ntBASIC11.91□□□□□ -0.5
HSPG2P98160 AL390719.2-201ENST00000606993 987 ntBASIC11.91□□□□□ -0.5
HSPG2P98160 AC027601.4-201ENST00000611259 610 ntBASIC11.91□□□□□ -0.5
HSPG2P98160 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC11.91□□□□□ -0.5
HSPG2P98160 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC11.91□□□□□ -0.5
HSPG2P98160 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HSPG2P98160 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HSPG2P98160 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HSPG2P98160 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HSPG2P98160 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC11.9□□□□□ -0.5
HSPG2P98160 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 PRKN-208ENST00000610470 531 ntTSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 PRKN-209ENST00000612485 225 ntTSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 BAALC-202ENST00000306391 243 ntTSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 BAALC-204ENST00000330955 222 ntTSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 RFPL4AP1-201ENST00000530883 850 ntBASIC11.9□□□□□ -0.5
HSPG2P98160 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 TPM1-218ENST00000559281 851 ntTSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC11.9□□□□□ -0.5
HSPG2P98160 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC11.9□□□□□ -0.5
HSPG2P98160 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC11.9□□□□□ -0.5
HSPG2P98160 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
HSPG2P98160 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
HSPG2P98160 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HSPG2P98160 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
HSPG2P98160 FAM197Y8-203ENST00000450145 560 ntBASIC11.9□□□□□ -0.51
HSPG2P98160 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC11.9□□□□□ -0.51
HSPG2P98160 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC11.9□□□□□ -0.51
HSPG2P98160 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC11.9□□□□□ -0.51
HSPG2P98160 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC11.9□□□□□ -0.51
HSPG2P98160 FEM1AP1-201ENST00000431297 1995 ntBASIC11.9□□□□□ -0.51
HSPG2P98160 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
HSPG2P98160 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC11.89□□□□□ -0.51
HSPG2P98160 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HSPG2P98160 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
HSPG2P98160 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC11.89□□□□□ -0.51
HSPG2P98160 AC073648.2-201ENST00000510116 352 ntBASIC11.89□□□□□ -0.51
HSPG2P98160 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 CD63-204ENST00000546939 779 ntTSL 3 BASIC11.89□□□□□ -0.51
HSPG2P98160 AC139887.3-201ENST00000568585 713 ntBASIC11.89□□□□□ -0.51
HSPG2P98160 AL136038.4-201ENST00000603606 1261 ntBASIC11.89□□□□□ -0.51
HSPG2P98160 LITAF-220ENST00000620789 692 ntTSL 5 BASIC11.89□□□□□ -0.51
HSPG2P98160 PHGDH-210ENST00000641115 1638 ntBASIC11.89□□□□□ -0.51
HSPG2P98160 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC11.89□□□□□ -0.51
HSPG2P98160 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC11.89□□□□□ -0.51
HSPG2P98160 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC11.89□□□□□ -0.51
HSPG2P98160 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC11.89□□□□□ -0.51
HSPG2P98160 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC11.89□□□□□ -0.51
HSPG2P98160 AC099336.1-202ENST00000602961 463 ntBASIC11.89□□□□□ -0.51
HSPG2P98160 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
HSPG2P98160 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
HSPG2P98160 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms