Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.78■□□□□ 0.76
NEK3P51956 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
NEK3P51956 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.78■□□□□ 0.76
NEK3P51956 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.78■□□□□ 0.76
NEK3P51956 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.78■□□□□ 0.76
NEK3P51956 AL353708.3-201ENST00000610272 989 ntBASIC19.78■□□□□ 0.76
NEK3P51956 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
NEK3P51956 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.78■□□□□ 0.76
NEK3P51956 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.78■□□□□ 0.76
NEK3P51956 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.77■□□□□ 0.76
NEK3P51956 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NEK3P51956 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.77■□□□□ 0.76
NEK3P51956 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.77■□□□□ 0.76
NEK3P51956 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
NEK3P51956 CD177P1-201ENST00000606252 935 ntBASIC19.77■□□□□ 0.76
NEK3P51956 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
NEK3P51956 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NEK3P51956 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.77■□□□□ 0.76
NEK3P51956 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
NEK3P51956 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NEK3P51956 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
NEK3P51956 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
NEK3P51956 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
NEK3P51956 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 LETM1P2-201ENST00000597330 2178 ntBASIC19.76■□□□□ 0.75
NEK3P51956 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.76■□□□□ 0.75
NEK3P51956 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
NEK3P51956 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NEK3P51956 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
NEK3P51956 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
NEK3P51956 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NEK3P51956 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NEK3P51956 FAM197Y1-201ENST00000421178 764 ntBASIC19.75■□□□□ 0.75
NEK3P51956 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.75■□□□□ 0.75
NEK3P51956 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 AC026471.5-201ENST00000615068 467 ntBASIC19.75■□□□□ 0.75
NEK3P51956 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.75■□□□□ 0.75
NEK3P51956 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.75■□□□□ 0.75
NEK3P51956 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NEK3P51956 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.75■□□□□ 0.75
NEK3P51956 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
NEK3P51956 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NEK3P51956 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.75■□□□□ 0.75
NEK3P51956 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms