Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.1■□□□□ 0.81
LIG3P49916 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.1■□□□□ 0.81
LIG3P49916 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.1■□□□□ 0.81
LIG3P49916 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.1■□□□□ 0.81
LIG3P49916 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.1■□□□□ 0.81
LIG3P49916 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.1■□□□□ 0.81
LIG3P49916 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.1■□□□□ 0.81
LIG3P49916 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIG3P49916 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LIG3P49916 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 Z82202.1-201ENST00000623446 1880 ntBASIC20.09■□□□□ 0.81
LIG3P49916 AC104581.1-202ENST00000635932 2618 ntBASIC20.09■□□□□ 0.81
LIG3P49916 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
LIG3P49916 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 POM121L13P-201ENST00000422362 380 ntBASIC20.09■□□□□ 0.81
LIG3P49916 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
LIG3P49916 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.09■□□□□ 0.81
LIG3P49916 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.09■□□□□ 0.81
LIG3P49916 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.09■□□□□ 0.81
LIG3P49916 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.09■□□□□ 0.81
LIG3P49916 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIG3P49916 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.08■□□□□ 0.81
LIG3P49916 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.08■□□□□ 0.81
LIG3P49916 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
LIG3P49916 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.08■□□□□ 0.81
LIG3P49916 AC098590.1-201ENST00000468126 897 ntBASIC20.08■□□□□ 0.81
LIG3P49916 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIG3P49916 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
LIG3P49916 AC233263.1-201ENST00000578059 224 ntBASIC20.08■□□□□ 0.81
LIG3P49916 AC120498.8-201ENST00000614275 531 ntBASIC20.08■□□□□ 0.81
LIG3P49916 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIG3P49916 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIG3P49916 PTBP1P-201ENST00000554374 1601 ntBASIC20.08■□□□□ 0.8
LIG3P49916 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIG3P49916 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.08■□□□□ 0.8
LIG3P49916 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.08■□□□□ 0.8
LIG3P49916 AC090340.1-201ENST00000620778 4980 ntBASIC20.08■□□□□ 0.8
LIG3P49916 AL390961.4-201ENST00000623958 2535 ntBASIC20.08■□□□□ 0.8
LIG3P49916 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.08■□□□□ 0.8
LIG3P49916 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIG3P49916 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 AC092720.2-201ENST00000602388 1665 ntBASIC20.07■□□□□ 0.8
LIG3P49916 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.07■□□□□ 0.8
LIG3P49916 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.07■□□□□ 0.8
LIG3P49916 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.07■□□□□ 0.8
LIG3P49916 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.07■□□□□ 0.8
LIG3P49916 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.07■□□□□ 0.8
LIG3P49916 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.07■□□□□ 0.8
LIG3P49916 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIG3P49916 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms