Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCC3P46736 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
BRCC3P46736 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
BRCC3P46736 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCC3P46736 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.44■□□□□ 0.86
BRCC3P46736 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.44■□□□□ 0.86
BRCC3P46736 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
BRCC3P46736 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCC3P46736 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCC3P46736 AC141257.4-201ENST00000634557 245 ntBASIC20.44■□□□□ 0.86
BRCC3P46736 AC136944.6-201ENST00000634818 245 ntBASIC20.44■□□□□ 0.86
BRCC3P46736 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
BRCC3P46736 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.44■□□□□ 0.86
BRCC3P46736 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
BRCC3P46736 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
BRCC3P46736 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.43■□□□□ 0.86
BRCC3P46736 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.43■□□□□ 0.86
BRCC3P46736 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.43■□□□□ 0.86
BRCC3P46736 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
BRCC3P46736 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
BRCC3P46736 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
BRCC3P46736 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.42■□□□□ 0.86
BRCC3P46736 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.42■□□□□ 0.86
BRCC3P46736 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
BRCC3P46736 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.42■□□□□ 0.86
BRCC3P46736 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 KRT8P45-201ENST00000414328 1447 ntBASIC20.42■□□□□ 0.86
BRCC3P46736 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
BRCC3P46736 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.42■□□□□ 0.86
BRCC3P46736 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
BRCC3P46736 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.42■□□□□ 0.86
BRCC3P46736 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.42■□□□□ 0.86
BRCC3P46736 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
BRCC3P46736 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCC3P46736 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCC3P46736 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.41■□□□□ 0.86
BRCC3P46736 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.41■□□□□ 0.86
BRCC3P46736 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.41■□□□□ 0.86
BRCC3P46736 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
BRCC3P46736 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
BRCC3P46736 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.41■□□□□ 0.86
BRCC3P46736 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
BRCC3P46736 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
BRCC3P46736 YBX1P2-201ENST00000489612 999 ntBASIC20.41■□□□□ 0.86
BRCC3P46736 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCC3P46736 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.41■□□□□ 0.86
BRCC3P46736 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms