Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 AC026271.3-201ENST00000571884 352 ntBASIC17.59■□□□□ 0.41
MSX1P28360 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.59■□□□□ 0.41
MSX1P28360 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSX1P28360 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.59■□□□□ 0.41
MSX1P28360 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX1P28360 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.41
MSX1P28360 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX1P28360 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX1P28360 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.58■□□□□ 0.41
MSX1P28360 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.41
MSX1P28360 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MSX1P28360 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
MSX1P28360 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
MSX1P28360 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX1P28360 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
MSX1P28360 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 AC145285.6-201ENST00000604632 637 ntBASIC17.58■□□□□ 0.4
MSX1P28360 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX1P28360 CR392000.1-201ENST00000624770 1228 ntBASIC17.58■□□□□ 0.4
MSX1P28360 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.58■□□□□ 0.4
MSX1P28360 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX1P28360 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX1P28360 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.58■□□□□ 0.4
MSX1P28360 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
MSX1P28360 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.57■□□□□ 0.4
MSX1P28360 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.57■□□□□ 0.4
MSX1P28360 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.57■□□□□ 0.4
MSX1P28360 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.57■□□□□ 0.4
MSX1P28360 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 AC004980.1-204ENST00000429707 299 ntBASIC17.57■□□□□ 0.4
MSX1P28360 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.57■□□□□ 0.4
MSX1P28360 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MSX1P28360 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
MSX1P28360 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX1P28360 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.56■□□□□ 0.4
MSX1P28360 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX1P28360 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX1P28360 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.56■□□□□ 0.4
MSX1P28360 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.56■□□□□ 0.4
MSX1P28360 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.56■□□□□ 0.4
MSX1P28360 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
MSX1P28360 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX1P28360 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
MSX1P28360 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX1P28360 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX1P28360 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX1P28360 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.55■□□□□ 0.4
MSX1P28360 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 UNC93B2-201ENST00000285383 730 ntBASIC17.55■□□□□ 0.4
MSX1P28360 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSX1P28360 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.55■□□□□ 0.4
MSX1P28360 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX1P28360 RBM17P1-201ENST00000453646 1190 ntBASIC17.55■□□□□ 0.4
MSX1P28360 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms