Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.1■□□□□ 0.65
MSH3P20585 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH3P20585 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.1■□□□□ 0.65
MSH3P20585 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
MSH3P20585 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MSH3P20585 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
MSH3P20585 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
MSH3P20585 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.09■□□□□ 0.65
MSH3P20585 AC004980.1-204ENST00000429707 299 ntBASIC19.09■□□□□ 0.65
MSH3P20585 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.09■□□□□ 0.65
MSH3P20585 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.09■□□□□ 0.65
MSH3P20585 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MSH3P20585 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH3P20585 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
MSH3P20585 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH3P20585 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
MSH3P20585 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.08■□□□□ 0.64
MSH3P20585 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.08■□□□□ 0.64
MSH3P20585 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.08■□□□□ 0.64
MSH3P20585 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
MSH3P20585 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.08■□□□□ 0.64
MSH3P20585 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH3P20585 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
MSH3P20585 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.07■□□□□ 0.64
MSH3P20585 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.07■□□□□ 0.64
MSH3P20585 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH3P20585 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
MSH3P20585 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
MSH3P20585 AL355355.2-201ENST00000442321 338 ntBASIC19.07■□□□□ 0.64
MSH3P20585 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.07■□□□□ 0.64
MSH3P20585 SNORA78-201ENST00000459373 127 ntBASIC19.07■□□□□ 0.64
MSH3P20585 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH3P20585 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
MSH3P20585 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.07■□□□□ 0.64
MSH3P20585 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH3P20585 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.07■□□□□ 0.64
MSH3P20585 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.07■□□□□ 0.64
MSH3P20585 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
MSH3P20585 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSH3P20585 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
MSH3P20585 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH3P20585 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
MSH3P20585 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.06■□□□□ 0.64
MSH3P20585 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
MSH3P20585 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
MSH3P20585 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms