Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.45■■□□□ 1.18
COL2A1P02458 AL023284.2-201ENST00000405850 579 ntBASIC22.45■■□□□ 1.18
COL2A1P02458 VENTXP5-201ENST00000523979 775 ntBASIC22.45■■□□□ 1.18
COL2A1P02458 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 MIR3180-5-201ENST00000583743 153 ntBASIC22.45■■□□□ 1.18
COL2A1P02458 AC069148.1-201ENST00000608741 768 ntBASIC22.45■■□□□ 1.18
COL2A1P02458 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC22.45■■□□□ 1.18
COL2A1P02458 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.45■■□□□ 1.18
COL2A1P02458 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.45■■□□□ 1.18
COL2A1P02458 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
COL2A1P02458 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL2A1P02458 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC22.45■■□□□ 1.18
COL2A1P02458 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC22.44■■□□□ 1.18
COL2A1P02458 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL2A1P02458 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC22.44■■□□□ 1.18
COL2A1P02458 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC22.44■■□□□ 1.18
COL2A1P02458 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.44■■□□□ 1.18
COL2A1P02458 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.44■■□□□ 1.18
COL2A1P02458 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL2A1P02458 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL2A1P02458 TREX1-205ENST00000625293 1783 ntBASIC22.44■■□□□ 1.18
COL2A1P02458 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL2A1P02458 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
COL2A1P02458 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.44■■□□□ 1.18
COL2A1P02458 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL2A1P02458 LINC01521-201ENST00000504184 1943 ntBASIC22.44■■□□□ 1.18
COL2A1P02458 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.44■■□□□ 1.18
COL2A1P02458 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
COL2A1P02458 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.43■■□□□ 1.18
COL2A1P02458 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.43■■□□□ 1.18
COL2A1P02458 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 HBZP1-201ENST00000354915 429 ntBASIC22.43■■□□□ 1.18
COL2A1P02458 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC22.43■■□□□ 1.18
COL2A1P02458 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC22.43■■□□□ 1.18
COL2A1P02458 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
COL2A1P02458 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL2A1P02458 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.42■■□□□ 1.18
COL2A1P02458 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.42■■□□□ 1.18
COL2A1P02458 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.42■■□□□ 1.18
COL2A1P02458 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC22.42■■□□□ 1.18
COL2A1P02458 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC22.42■■□□□ 1.18
COL2A1P02458 FGF14-AS2-201ENST00000606448 1074 ntBASIC22.42■■□□□ 1.18
COL2A1P02458 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.42■■□□□ 1.18
COL2A1P02458 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC22.42■■□□□ 1.18
COL2A1P02458 LINC01311-201ENST00000565162 1445 ntBASIC22.42■■□□□ 1.18
COL2A1P02458 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
COL2A1P02458 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
COL2A1P02458 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC22.42■■□□□ 1.18
COL2A1P02458 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.42■■□□□ 1.18
COL2A1P02458 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL2A1P02458 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.41■■□□□ 1.18
COL2A1P02458 MCCD1P1-208ENST00000445732 328 ntBASIC22.41■■□□□ 1.18
COL2A1P02458 CNP-204ENST00000472031 1019 ntTSL 2 BASIC22.41■■□□□ 1.18
COL2A1P02458 AC034232.1-201ENST00000506026 1064 ntBASIC22.41■■□□□ 1.18
COL2A1P02458 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC22.41■■□□□ 1.18
COL2A1P02458 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
COL2A1P02458 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
COL2A1P02458 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC22.41■■□□□ 1.18
COL2A1P02458 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 AL157384.1-201ENST00000445995 2473 ntBASIC22.41■■□□□ 1.18
COL2A1P02458 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.41■■□□□ 1.18
COL2A1P02458 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
COL2A1P02458 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL2A1P02458 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC22.41■■□□□ 1.18
COL2A1P02458 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.41■■□□□ 1.18
COL2A1P02458 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC22.41■■□□□ 1.18
COL2A1P02458 CLN6-214ENST00000636314 442 ntTSL 3 BASIC22.41■■□□□ 1.18
COL2A1P02458 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL2A1P02458 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL2A1P02458 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms