Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MAPK12-204ENST00000467891 2019 ntTSL 531.09■■■□□ 2.573e-6■■□□□ 11.4
SMNDC1O75940 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.73e-6■■□□□ 11.4
SMNDC1O75940 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.41■■□□□ 1.183e-6■■□□□ 11.4
SMNDC1O75940 MAPK12-206ENST00000488504 1785 ntTSL 521■□□□□ 0.953e-6■■□□□ 11.4
SMNDC1O75940 MAPK12-209ENST00000497036 6248 ntTSL 219.18■□□□□ 0.663e-6■■□□□ 11.4
SMNDC1O75940 MAPK12-205ENST00000482969 2101 ntTSL 218.02■□□□□ 0.473e-6■■□□□ 11.4
SMNDC1O75940 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.12□□□□□ -0.313e-6■■□□□ 11.4
SMNDC1O75940 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.27■□□□□ 0.365e-6■■□□□ 11.4
SMNDC1O75940 CFB-272ENST00000452035 1866 ntTSL 214.91□□□□□ -0.025e-6■■□□□ 11.4
SMNDC1O75940 MAT2A-205ENST00000481412 1438 ntTSL 1 (best)12.2□□□□□ -0.465e-6■■□□□ 11.4
SMNDC1O75940 CFB-271ENST00000425368 2862 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.515e-6■■□□□ 11.4
SMNDC1O75940 AL645922.1-202ENST00000477310 3377 ntTSL 5 BASIC11.47□□□□□ -0.575e-6■■□□□ 11.4
SMNDC1O75940 CFB-274ENST00000461483 1277 ntTSL 510.35□□□□□ -0.755e-6■■□□□ 11.4
SMNDC1O75940 AL645922.1-201ENST00000456570 3874 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.85e-6■■□□□ 11.4
SMNDC1O75940 CFB-283ENST00000497841 736 ntTSL 38.13□□□□□ -1.115e-6■■□□□ 11.4
SMNDC1O75940 CFB-276ENST00000467150 526 ntTSL 27.56□□□□□ -1.25e-6■■□□□ 11.4
SMNDC1O75940 MAT2A-206ENST00000490878 565 ntTSL 37.45□□□□□ -1.225e-6■■□□□ 11.4
SMNDC1O75940 CFB-282ENST00000483004 940 ntTSL 56.51□□□□□ -1.375e-6■■□□□ 11.4
SMNDC1O75940 CFB-275ENST00000465750 568 ntTSL 26.49□□□□□ -1.375e-6■■□□□ 11.4
SMNDC1O75940 CFB-281ENST00000482886 481 ntTSL 25.94□□□□□ -1.465e-6■■□□□ 11.4
SMNDC1O75940 SCRIB-205ENST00000526832 2189 ntTSL 1 (best)20.01■□□□□ 0.796e-9■■□□□ 11.4
SMNDC1O75940 SCRIB-204ENST00000525051 1685 ntTSL 1 (best)18.63■□□□□ 0.576e-9■■□□□ 11.4
SMNDC1O75940 SCRIB-206ENST00000531163 538 ntTSL 214.99□□□□□ -0.016e-9■■□□□ 11.4
SMNDC1O75940 TPX2-202ENST00000340513 3605 ntTSL 1 (best) BASIC13.44□□□□□ -0.261e-12■■□□□ 11.4
SMNDC1O75940 TPX2-201ENST00000300403 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.41e-12■■□□□ 11.4
SMNDC1O75940 ZFAS1-210ENST00000623640 732 ntTSL 2 BASIC9.29□□□□□ -0.921e-323■■□□□ 11.4
SMNDC1O75940 RPL32-205ENST00000434963 439 ntTSL 57.81□□□□□ -1.165e-8■■□□□ 11.4
SMNDC1O75940 SNORA7A-201ENST00000384765 139 ntBASIC6.09□□□□□ -1.435e-8■■□□□ 11.4
SMNDC1O75940 U2SURP-211ENST00000488497 3557 ntTSL 1 (best)5.88□□□□□ -1.478e-13■■□□□ 11.4
SMNDC1O75940 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.588e-13■■□□□ 11.4
SMNDC1O75940 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.82□□□□□ -1.88e-13■■□□□ 11.4
SMNDC1O75940 U2SURP-203ENST00000463563 4364 ntTSL 22.94□□□□□ -1.948e-13■■□□□ 11.4
SMNDC1O75940 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.64■□□□□ 0.894e-8■■□□□ 11.4
SMNDC1O75940 TSC2-226ENST00000569930 2621 ntTSL 220.07■□□□□ 0.81e-6■■□□□ 11.4
SMNDC1O75940 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.014e-8■■□□□ 11.4
SMNDC1O75940 NCKAP1-207ENST00000493359 615 ntTSL 27.44□□□□□ -1.224e-8■■□□□ 11.4
SMNDC1O75940 TPT1-202ENST00000379055 948 ntTSL 2 BASIC22.63■■□□□ 1.211e-323■■□□□ 11.4
SMNDC1O75940 TPT1-203ENST00000379056 1101 ntTSL 1 (best) BASIC11.06□□□□□ -0.641e-323■■□□□ 11.4
SMNDC1O75940 TPT1-209ENST00000528619 731 ntTSL 29.74□□□□□ -0.851e-323■■□□□ 11.4
SMNDC1O75940 TPT1-204ENST00000379060 764 ntTSL 5 BASIC8.26□□□□□ -1.091e-323■■□□□ 11.4
SMNDC1O75940 TPT1-207ENST00000490277 1851 ntTSL 28.02□□□□□ -1.121e-323■■□□□ 11.4
SMNDC1O75940 TPT1-210ENST00000529421 801 ntTSL 37.25□□□□□ -1.251e-323■■□□□ 11.4
SMNDC1O75940 TPT1-206ENST00000484604 794 ntTSL 27.07□□□□□ -1.281e-323■■□□□ 11.4
SMNDC1O75940 TPT1-213ENST00000533567 594 ntTSL 36.92□□□□□ -1.31e-323■■□□□ 11.4
SMNDC1O75940 TPT1-211ENST00000530245 530 ntTSL 36.87□□□□□ -1.311e-323■■□□□ 11.4
SMNDC1O75940 SNORA31-201ENST00000362607 130 ntBASIC3.98□□□□□ -1.771e-323■■□□□ 11.4
SMNDC1O75940 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.065e-8■■□□□ 11.4
SMNDC1O75940 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.45■□□□□ 0.389e-8■■□□□ 11.4
SMNDC1O75940 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.249e-8■■□□□ 11.4
SMNDC1O75940 FTCD-211ENST00000494498 840 ntTSL 317.44■□□□□ 0.382e-6■■□□□ 11.4
SMNDC1O75940 FTCD-206ENST00000460011 1260 ntTSL 1 (best)17.25■□□□□ 0.352e-6■■□□□ 11.4
SMNDC1O75940 C22orf39-204ENST00000509549 2979 ntTSL 212.48□□□□□ -0.419e-8■■□□□ 11.4
SMNDC1O75940 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.853e-6■□□□□ 11.3
SMNDC1O75940 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC14.83□□□□□ -0.042e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-203ENST00000420199 1002 ntTSL 313.86□□□□□ -0.192e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-215ENST00000623163 851 ntTSL 512.93□□□□□ -0.342e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-209ENST00000435947 696 ntTSL 212.52□□□□□ -0.412e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC11.52□□□□□ -0.572e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-206ENST00000428833 641 ntTSL 211.02□□□□□ -0.652e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-210ENST00000453754 401 ntTSL 310.95□□□□□ -0.662e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-212ENST00000589187 568 ntTSL 4 BASIC10.76□□□□□ -0.692e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-207ENST00000431043 998 ntTSL 210.58□□□□□ -0.722e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC10.58□□□□□ -0.722e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-217ENST00000623650 886 ntTSL 59.1□□□□□ -0.952e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-220ENST00000624128 672 ntTSL 28.86□□□□□ -0.992e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-202ENST00000414002 430 ntTSL 28.78□□□□□ -12e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC8.31□□□□□ -1.082e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC7.61□□□□□ -1.192e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-205ENST00000427501 680 ntTSL 26.32□□□□□ -1.42e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.82□□□□□ -1.482e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-216ENST00000623267 374 ntTSL 55.44□□□□□ -1.542e-15■□□□□ 11.3
SMNDC1O75940 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.44□□□□□ -1.542e-15■□□□□ 11.3
SMNDC1O75940 AC005726.2-201ENST00000481916 2091 ntTSL 1 (best)21.81■■□□□ 1.081e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.661e-7■□□□□ 11.3
SMNDC1O75940 AC005726.2-203ENST00000584196 2103 ntTSL 218.74■□□□□ 0.591e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.371e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.331e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.111e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.081e-7■□□□□ 11.3
SMNDC1O75940 ARF1-212ENST00000497165 675 ntTSL 313.96□□□□□ -0.171e-7■□□□□ 11.3
SMNDC1O75940 SGK494-203ENST00000469832 602 ntTSL 313.63□□□□□ -0.231e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-208ENST00000472607 713 ntTSL 313.27□□□□□ -0.291e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-206ENST00000417060 1072 ntAPPRIS ALT2 TSL 1 (best)13.02□□□□□ -0.331e-7■□□□□ 11.3
SMNDC1O75940 C21orf58-210ENST00000491666 1196 ntTSL 513.02□□□□□ -0.331e-7■□□□□ 11.3
SMNDC1O75940 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC12.69□□□□□ -0.381e-7■□□□□ 11.3
SMNDC1O75940 SGK494-212ENST00000581199 866 ntTSL 1 (best)12.2□□□□□ -0.461e-7■□□□□ 11.3
SMNDC1O75940 ARF1-211ENST00000490705 881 ntTSL 312.01□□□□□ -0.491e-7■□□□□ 11.3
SMNDC1O75940 SGK494-207ENST00000527863 598 ntTSL 210.8□□□□□ -0.681e-7■□□□□ 11.3
SMNDC1O75940 SGK494-209ENST00000530121 581 ntTSL 310.35□□□□□ -0.751e-7■□□□□ 11.3
SMNDC1O75940 SGK494-201ENST00000301037 1233 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.761e-7■□□□□ 11.3
SMNDC1O75940 AC005726.2-202ENST00000531839 1033 ntAPPRIS P5 TSL 210.2□□□□□ -0.781e-7■□□□□ 11.3
SMNDC1O75940 SGK494-205ENST00000525510 559 ntTSL 410.06□□□□□ -0.81e-7■□□□□ 11.3
SMNDC1O75940 SGK494-206ENST00000526073 571 ntTSL 410.05□□□□□ -0.81e-7■□□□□ 11.3
SMNDC1O75940 SGK494-208ENST00000527918 632 ntTSL 29.56□□□□□ -0.881e-7■□□□□ 11.3
SMNDC1O75940 LINC00888-201ENST00000468380 1241 ntTSL 216.91■□□□□ 0.31e-7■□□□□ 11.3
SMNDC1O75940 LINC00888-202ENST00000471496 1490 ntTSL 3 BASIC11.01□□□□□ -0.651e-7■□□□□ 11.3
SMNDC1O75940 LINC00888-204ENST00000487386 421 ntBASIC7.72□□□□□ -1.171e-7■□□□□ 11.3
SMNDC1O75940 SNORA63D-201ENST00000364359 132 ntBASIC2.84□□□□□ -1.951e-7■□□□□ 11.3
SMNDC1O75940 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.612e-10■□□□□ 11.3
SMNDC1O75940 RBM39-215ENST00000442447 644 ntTSL 214.54□□□□□ -0.084e-12■□□□□ 11.3
Retrieved 100 of 11,362 protein–RNA pairs in 103.5 ms