Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC11O43248 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC11O43248 SDHAP1-207ENST00000440850 2000 ntBASIC19.55■□□□□ 0.72
HOXC11O43248 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC11O43248 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC11O43248 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC11O43248 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 AL023973.1-201ENST00000624619 620 ntBASIC19.55■□□□□ 0.72
HOXC11O43248 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC11O43248 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC11O43248 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC11O43248 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC11O43248 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HOXC11O43248 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC11O43248 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 AP000523.1-201ENST00000398242 1049 ntBASIC19.54■□□□□ 0.72
HOXC11O43248 AL031133.1-201ENST00000406807 723 ntBASIC19.54■□□□□ 0.72
HOXC11O43248 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC11O43248 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC11O43248 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC11O43248 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC11O43248 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC11O43248 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC11O43248 AL441883.1-201ENST00000566170 1045 ntBASIC19.54■□□□□ 0.72
HOXC11O43248 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC11O43248 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 AC140113.3-201ENST00000605663 199 ntBASIC19.54■□□□□ 0.72
HOXC11O43248 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HOXC11O43248 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC11O43248 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC11O43248 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC11O43248 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HOXC11O43248 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.53■□□□□ 0.72
HOXC11O43248 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 NEK4P2-201ENST00000580004 1012 ntBASIC19.53■□□□□ 0.72
HOXC11O43248 MIR4674-201ENST00000582457 87 ntBASIC19.53■□□□□ 0.72
HOXC11O43248 AC008622.2-201ENST00000617006 1229 ntBASIC19.53■□□□□ 0.72
HOXC11O43248 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
HOXC11O43248 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXC11O43248 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC11O43248 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
HOXC11O43248 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.52■□□□□ 0.72
HOXC11O43248 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC11O43248 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXC11O43248 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.52■□□□□ 0.72
HOXC11O43248 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.52■□□□□ 0.72
HOXC11O43248 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.52■□□□□ 0.72
HOXC11O43248 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HOXC11O43248 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HOXC11O43248 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms