Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 AL512353.2-201ENST00000448759 1962 ntBASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 FEM1AP3-201ENST00000403722 1741 ntBASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 WIZP1-201ENST00000531444 2299 ntBASIC19.53■□□□□ 0.72
TCRBV7S3A2A0A539 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 POM121L13P-201ENST00000422362 380 ntBASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 UNC93B5-201ENST00000530315 699 ntBASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.52■□□□□ 0.72
TCRBV7S3A2A0A539 AC093525.10-201ENST00000625130 1569 ntBASIC19.52■□□□□ 0.71
TCRBV7S3A2A0A539 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
TCRBV7S3A2A0A539 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TCRBV7S3A2A0A539 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TCRBV7S3A2A0A539 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TCRBV7S3A2A0A539 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 AL355802.2-201ENST00000402069 882 ntBASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.51■□□□□ 0.71
TCRBV7S3A2A0A539 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TCRBV7S3A2A0A539 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms