Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX2Q9NPC8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.65■□□□□ 0.9
SIX2Q9NPC8 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 Z85996.1-201ENST00000494644 937 ntBASIC20.65■□□□□ 0.9
SIX2Q9NPC8 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 AC110285.5-201ENST00000611501 352 ntBASIC20.65■□□□□ 0.9
SIX2Q9NPC8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX2Q9NPC8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX2Q9NPC8 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 POU5F1P3-201ENST00000428824 1078 ntBASIC20.64■□□□□ 0.89
SIX2Q9NPC8 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.64■□□□□ 0.89
SIX2Q9NPC8 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SIX2Q9NPC8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 AL031598.1-201ENST00000561511 1773 ntBASIC20.62■□□□□ 0.89
SIX2Q9NPC8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 TSPY21P-201ENST00000433481 731 ntBASIC20.62■□□□□ 0.89
SIX2Q9NPC8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 AC093525.10-201ENST00000625130 1569 ntBASIC20.62■□□□□ 0.89
SIX2Q9NPC8 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX2Q9NPC8 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms