Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.82■□□□□ 0.76
USP29Q9HBJ7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.82■□□□□ 0.76
USP29Q9HBJ7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP29Q9HBJ7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 SNORA78-201ENST00000459373 127 ntBASIC19.8■□□□□ 0.76
USP29Q9HBJ7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 AC233702.5-201ENST00000584107 538 ntBASIC19.8■□□□□ 0.76
USP29Q9HBJ7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP29Q9HBJ7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP29Q9HBJ7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
USP29Q9HBJ7 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP29Q9HBJ7 KRT17P2-201ENST00000300992 1314 ntBASIC19.78■□□□□ 0.76
USP29Q9HBJ7 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.78■□□□□ 0.76
USP29Q9HBJ7 CROCCP3-202ENST00000420820 1947 ntBASIC19.78■□□□□ 0.76
USP29Q9HBJ7 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP29Q9HBJ7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP29Q9HBJ7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
USP29Q9HBJ7 RPS2P55-201ENST00000397318 883 ntBASIC19.78■□□□□ 0.76
USP29Q9HBJ7 AC239809.2-201ENST00000415381 517 ntBASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms