Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM54Q9BYV2 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.98■□□□□ 0.63
TRIM54Q9BYV2 AL032819.2-201ENST00000624543 2162 ntBASIC18.98■□□□□ 0.63
TRIM54Q9BYV2 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM54Q9BYV2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 CD99P1-205ENST00000527459 561 ntBASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 AC090340.1-201ENST00000620778 4980 ntBASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM54Q9BYV2 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 MTDHP1-201ENST00000605323 784 ntBASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM54Q9BYV2 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.95■□□□□ 0.62
TRIM54Q9BYV2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM54Q9BYV2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
TRIM54Q9BYV2 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
TRIM54Q9BYV2 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms