Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 AC104771.1-201ENST00000603335 964 ntBASIC16.75■□□□□ 0.27
NKX3-1Q99801 AL121832.2-201ENST00000610979 668 ntBASIC16.75■□□□□ 0.27
NKX3-1Q99801 AL050303.2-201ENST00000619798 666 ntBASIC16.75■□□□□ 0.27
NKX3-1Q99801 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 AL138781.2-201ENST00000617896 1843 ntBASIC16.75■□□□□ 0.27
NKX3-1Q99801 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
NKX3-1Q99801 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
NKX3-1Q99801 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 NXN-202ENST00000537628 1340 ntTSL 3 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
NKX3-1Q99801 SDHAP1-207ENST00000440850 2000 ntBASIC16.74■□□□□ 0.27
NKX3-1Q99801 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
NKX3-1Q99801 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 FZD10-202ENST00000539839 3282 ntBASIC16.73■□□□□ 0.27
NKX3-1Q99801 AC141586.3-201ENST00000562166 1838 ntBASIC16.73■□□□□ 0.27
NKX3-1Q99801 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 NCF1B-203ENST00000435988 1254 ntBASIC16.73■□□□□ 0.27
NKX3-1Q99801 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.73■□□□□ 0.27
NKX3-1Q99801 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 AC083906.2-201ENST00000511578 360 ntBASIC16.73■□□□□ 0.27
NKX3-1Q99801 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
NKX3-1Q99801 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.73■□□□□ 0.27
NKX3-1Q99801 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.72■□□□□ 0.27
NKX3-1Q99801 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms