Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CDCA3Q99618 AP002414.4-201ENST00000589764 1148 ntBASIC20.03■□□□□ 0.8
CDCA3Q99618 AC024243.1-201ENST00000609234 778 ntBASIC20.03■□□□□ 0.8
CDCA3Q99618 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.03■□□□□ 0.8
CDCA3Q99618 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.03■□□□□ 0.8
CDCA3Q99618 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDCA3Q99618 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.03■□□□□ 0.8
CDCA3Q99618 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.03■□□□□ 0.8
CDCA3Q99618 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDCA3Q99618 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDCA3Q99618 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDCA3Q99618 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDCA3Q99618 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CDCA3Q99618 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.02■□□□□ 0.8
CDCA3Q99618 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CDCA3Q99618 CHCHD2P8-201ENST00000429873 447 ntBASIC20.02■□□□□ 0.8
CDCA3Q99618 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.02■□□□□ 0.8
CDCA3Q99618 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.02■□□□□ 0.8
CDCA3Q99618 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.02■□□□□ 0.8
CDCA3Q99618 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.02■□□□□ 0.8
CDCA3Q99618 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
CDCA3Q99618 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.02■□□□□ 0.8
CDCA3Q99618 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.02■□□□□ 0.8
CDCA3Q99618 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDCA3Q99618 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDCA3Q99618 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
CDCA3Q99618 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
CDCA3Q99618 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.02■□□□□ 0.79
CDCA3Q99618 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.02■□□□□ 0.79
CDCA3Q99618 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.02■□□□□ 0.79
CDCA3Q99618 AC026310.3-201ENST00000625186 2373 ntBASIC20.01■□□□□ 0.79
CDCA3Q99618 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDCA3Q99618 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CDCA3Q99618 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.01■□□□□ 0.79
CDCA3Q99618 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDCA3Q99618 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDCA3Q99618 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDCA3Q99618 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDCA3Q99618 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDCA3Q99618 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDCA3Q99618 UNC93B7-201ENST00000509439 705 ntBASIC20.01■□□□□ 0.79
CDCA3Q99618 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.01■□□□□ 0.79
CDCA3Q99618 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CDCA3Q99618 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.01■□□□□ 0.79
CDCA3Q99618 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.01■□□□□ 0.79
CDCA3Q99618 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.01■□□□□ 0.79
CDCA3Q99618 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CDCA3Q99618 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.01■□□□□ 0.79
CDCA3Q99618 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CDCA3Q99618 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.01■□□□□ 0.79
CDCA3Q99618 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CDCA3Q99618 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CDCA3Q99618 AL162741.1-201ENST00000565563 1558 ntBASIC20■□□□□ 0.79
CDCA3Q99618 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20■□□□□ 0.79
CDCA3Q99618 AC020907.5-201ENST00000624372 1936 ntBASIC20■□□□□ 0.79
CDCA3Q99618 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20■□□□□ 0.79
CDCA3Q99618 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CDCA3Q99618 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20■□□□□ 0.79
CDCA3Q99618 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20■□□□□ 0.79
CDCA3Q99618 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20■□□□□ 0.79
CDCA3Q99618 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20■□□□□ 0.79
CDCA3Q99618 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20■□□□□ 0.79
CDCA3Q99618 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDCA3Q99618 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20■□□□□ 0.79
CDCA3Q99618 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20■□□□□ 0.79
CDCA3Q99618 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20■□□□□ 0.79
CDCA3Q99618 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.99■□□□□ 0.79
CDCA3Q99618 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.99■□□□□ 0.79
CDCA3Q99618 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.99■□□□□ 0.79
CDCA3Q99618 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDCA3Q99618 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.99■□□□□ 0.79
CDCA3Q99618 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 HLA-F-220ENST00000434407 884 ntBASIC19.99■□□□□ 0.79
CDCA3Q99618 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDCA3Q99618 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.99■□□□□ 0.79
CDCA3Q99618 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.99■□□□□ 0.79
CDCA3Q99618 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.99■□□□□ 0.79
CDCA3Q99618 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.99■□□□□ 0.79
CDCA3Q99618 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.99■□□□□ 0.79
CDCA3Q99618 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.99■□□□□ 0.79
CDCA3Q99618 GPAT2P1-201ENST00000444924 1672 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms