Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
VPS35Q96QK1 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 KRT8P41-201ENST00000533985 1514 ntBASIC19.1■□□□□ 0.65
VPS35Q96QK1 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS35Q96QK1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 AC004951.3-201ENST00000418645 1148 ntBASIC19.09■□□□□ 0.65
VPS35Q96QK1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 Z82202.1-201ENST00000623446 1880 ntBASIC19.09■□□□□ 0.65
VPS35Q96QK1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS35Q96QK1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
VPS35Q96QK1 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS35Q96QK1 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
VPS35Q96QK1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS35Q96QK1 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS35Q96QK1 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS35Q96QK1 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS35Q96QK1 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
VPS35Q96QK1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS35Q96QK1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
VPS35Q96QK1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS35Q96QK1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS35Q96QK1 AC011506.1-201ENST00000474329 610 ntBASIC19.08■□□□□ 0.64
VPS35Q96QK1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.08■□□□□ 0.64
VPS35Q96QK1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.08■□□□□ 0.64
VPS35Q96QK1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS35Q96QK1 DGCR10-201ENST00000609839 495 ntBASIC19.08■□□□□ 0.64
VPS35Q96QK1 AC130371.2-201ENST00000619443 611 ntBASIC19.08■□□□□ 0.64
VPS35Q96QK1 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
VPS35Q96QK1 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS35Q96QK1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS35Q96QK1 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS35Q96QK1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 SDHAP1-207ENST00000440850 2000 ntBASIC19.07■□□□□ 0.64
VPS35Q96QK1 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 AC011298.2-201ENST00000617989 482 ntBASIC19.07■□□□□ 0.64
VPS35Q96QK1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS35Q96QK1 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
VPS35Q96QK1 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS35Q96QK1 AC091390.4-202ENST00000476426 537 ntBASIC19.06■□□□□ 0.64
VPS35Q96QK1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS35Q96QK1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS35Q96QK1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS35Q96QK1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms